Variant report

Variant	rs3775662
Chromosome Location	chr4:143071515-143071516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17015612	0.90[JPT][hapmap]
rs336304	0.83[GIH][hapmap]
rs336306	0.83[GIH][hapmap]
rs336313	0.83[GIH][hapmap]
rs336317	0.83[GIH][hapmap]
rs336325	0.83[GIH][hapmap]
rs336330	0.83[GIH][hapmap]
rs3775636	0.83[GIH][hapmap]
rs3775661	1.00[ASN][1000 genomes]
rs3775668	0.90[JPT][hapmap]
rs61733152	1.00[ASN][1000 genomes]
rs72933301	1.00[ASN][1000 genomes]
rs72935210	1.00[ASN][1000 genomes]
rs72935219	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830097	chr4:142949705-143136372	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143018800-143109600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:143043400-143089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:143049800-143114400	Weak transcription	Right Ventricle	heart
4	chr4:143050000-143079600	Weak transcription	NHDF-Ad	bronchial
5	chr4:143051400-143093400	Weak transcription	Left Ventricle	heart
6	chr4:143052400-143081400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:143052400-143111600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:143052600-143081400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:143052600-143094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:143057600-143078800	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:143057800-143079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:143057800-143114400	Weak transcription	Aorta	Aorta
13	chr4:143058000-143181000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:143060400-143072400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:143061000-143081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:143061200-143079000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:143061200-143079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:143061800-143102200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:143062200-143081200	Weak transcription	NHEK	skin
20	chr4:143064200-143078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:143064200-143080200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:143064200-143093200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:143064400-143078600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:143066000-143073400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr4:143066200-143072600	Strong transcription	Primary T cells from cord blood	blood
26	chr4:143066200-143074400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:143068800-143072600	Strong transcription	HSMM	muscle
28	chr4:143068800-143072600	Strong transcription	HSMMtube	muscle
29	chr4:143069200-143075400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:143069400-143080800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:143069800-143112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:143070000-143076600	Weak transcription	NH-A	brain
33	chr4:143070000-143079000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:143070200-143073000	Enhancers	Fetal Heart	heart
35	chr4:143070200-143074400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:143070400-143134400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:143070800-143071800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:143071000-143071800	Strong transcription	HMEC	breast
39	chr4:143071000-143072800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:143071000-143078800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:143071000-143117800	Weak transcription	Psoas Muscle	Psoas
42	chr4:143071200-143072000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:143071200-143074200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:143071200-143077000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:143071200-143077800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:143071200-143079600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr4:143071400-143072000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr4:143071400-143079400	Weak transcription	Dnd41	blood

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