Variant report

Variant	rs377566904
Chromosome Location	chr3:24090430-24090431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24082962..24085298-chr3:24090200..24092155,2	K562	blood:
2	chr3:24086798..24089297-chr3:24089834..24092711,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2527637	chr3:24090223-24091668	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
3	chr3:24088600-24090600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:24088600-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:24088800-24090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:24088800-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:24088800-24090600	Enhancers	Colon Smooth Muscle	Colon
9	chr3:24088800-24090600	Enhancers	Hela-S3	cervix
10	chr3:24088800-24090600	Enhancers	NHEK	skin
11	chr3:24088800-24090600	Enhancers	Osteobl	bone
12	chr3:24088800-24090800	Enhancers	Adipose Nuclei	Adipose
13	chr3:24088800-24090800	Enhancers	Placenta	Placenta
14	chr3:24088800-24090800	Enhancers	Ovary	ovary
15	chr3:24088800-24090800	Enhancers	HMEC	breast
16	chr3:24088800-24090800	Enhancers	NHLF	lung
17	chr3:24088800-24091400	Enhancers	HSMMtube	muscle
18	chr3:24089000-24090600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:24089000-24090600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:24089000-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:24089000-24090600	Enhancers	Aorta	Aorta
22	chr3:24089200-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:24089200-24090600	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:24089400-24090600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:24089800-24091600	Weak transcription	Psoas Muscle	Psoas
26	chr3:24089800-24092800	Weak transcription	A549	lung
27	chr3:24090000-24090600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:24090400-24090600	Enhancers	Lung	lung

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