Variant report

Variant	rs377629466
Chromosome Location	chr12:122621968-122621969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:122610093..122613162-chr12:122619277..122622905,4	K562	blood:
2	chr12:122492209..122492850-chr12:122621521..122622107,2	MCF-7	breast:
3	chr12:122616509..122619601-chr12:122620715..122623353,5	K562	blood:
4	chr12:122514027..122516383-chr12:122620376..122623225,2	K562	blood:
5	chr12:122617007..122620104-chr12:122620256..122623523,4	MCF-7	breast:
6	chr12:122618310..122620095-chr12:122620821..122622381,2	MCF-7	breast:
7	chr12:122620610..122622976-chr12:122690151..122692942,2	K562	blood:
8	chr12:122610584..122613162-chr12:122620730..122622905,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175727	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899569	chr12:122478728-122630909	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv527450	chr12:122481290-122676531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3407752	chr12:122621849-122624347	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122584200-122622000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:122608400-122625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:122608600-122632800	Strong transcription	Fetal Stomach	stomach
4	chr12:122610200-122629200	Strong transcription	Primary T cells from cord blood	blood
5	chr12:122610200-122629200	Strong transcription	Fetal Thymus	thymus
6	chr12:122610400-122630600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:122610400-122630600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:122610600-122629200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:122610600-122629400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:122610600-122633200	Weak transcription	Right Atrium	heart
11	chr12:122610800-122628800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr12:122610800-122630600	Strong transcription	Thymus	Thymus
13	chr12:122611200-122626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:122611200-122630400	Strong transcription	Gastric	stomach
15	chr12:122611400-122628800	Strong transcription	Pancreas	Pancrea
16	chr12:122611400-122629800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr12:122611400-122630400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr12:122611600-122629000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr12:122611600-122630000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:122611600-122630600	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:122611800-122622000	Strong transcription	Placenta	Placenta
22	chr12:122611800-122624200	Strong transcription	Fetal Intestine Large	intestine
23	chr12:122611800-122624200	Strong transcription	Dnd41	blood
24	chr12:122611800-122624400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr12:122611800-122626400	Strong transcription	Spleen	Spleen
26	chr12:122611800-122628800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr12:122611800-122628800	Strong transcription	Fetal Lung	lung
28	chr12:122611800-122628800	Strong transcription	Rectal Smooth Muscle	rectum
29	chr12:122611800-122629000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr12:122611800-122629400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr12:122612000-122622200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr12:122612000-122622400	Strong transcription	Brain Hippocampus Middle	brain
33	chr12:122612000-122628600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:122612000-122628800	Strong transcription	Fetal Brain Female	brain
35	chr12:122612000-122629400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr12:122612000-122630600	Strong transcription	Colonic Mucosa	Colon
37	chr12:122612000-122631000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:122612000-122632400	Strong transcription	Fetal Intestine Small	intestine
39	chr12:122612200-122627400	Strong transcription	Right Ventricle	heart
40	chr12:122612200-122628800	Strong transcription	Adipose Nuclei	Adipose
41	chr12:122612200-122632400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr12:122612600-122623000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr12:122613400-122628800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:122614400-122625200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr12:122614600-122622200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr12:122614600-122622600	Weak transcription	Stomach Mucosa	stomach
47	chr12:122614800-122622000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr12:122615000-122622000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr12:122615000-122626200	Strong transcription	Lung	lung
50	chr12:122615000-122628000	Weak transcription	NHDF-Ad	bronchial

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