Variant report

Variant	rs377632200
Chromosome Location	chr6:144498065-144498066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144477392..144479539-chr6:144497614..144499200,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144473600-144507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:144474200-144499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:144475000-144500600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144476800-144500600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:144479000-144500600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
8	chr6:144480200-144508200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:144481000-144507800	Weak transcription	Left Ventricle	heart
10	chr6:144481200-144507800	Weak transcription	Right Ventricle	heart
11	chr6:144484800-144500600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:144485200-144500600	Weak transcription	Primary B cells from cord blood	blood
13	chr6:144487000-144507800	Weak transcription	Esophagus	oesophagus
14	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:144489400-144508200	Weak transcription	Liver	Liver
16	chr6:144490400-144503400	Weak transcription	Spleen	Spleen
17	chr6:144493400-144498200	Genic enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:144493600-144500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144493600-144507600	Weak transcription	Placenta	Placenta
20	chr6:144493800-144500600	Weak transcription	Lung	lung
21	chr6:144495000-144500400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:144495200-144499200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:144496000-144499000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:144497200-144498400	Enhancers	Adipose Nuclei	Adipose
25	chr6:144497200-144499400	Weak transcription	GM12878-XiMat	blood
26	chr6:144497200-144499600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:144497400-144500600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:144497400-144508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:144497800-144500600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:144497800-144501000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:144498000-144498200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:144498000-144498800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:144498000-144500600	Weak transcription	Fetal Heart	heart

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