Variant report

Variant	rs377653938
Chromosome Location	chr15:35129535-35129536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv3340196	chr15:35128460-35132758	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35128800-35130200	Enhancers	Hela-S3	cervix
2	chr15:35128800-35130400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:35128800-35142400	Weak transcription	Pancreas	Pancrea
4	chr15:35129000-35130000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:35129000-35130000	Enhancers	K562	blood
6	chr15:35129000-35130000	Enhancers	NHEK	skin
7	chr15:35129000-35130200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:35129000-35130400	Enhancers	HSMM	muscle
9	chr15:35129000-35130400	Enhancers	HSMMtube	muscle
10	chr15:35129200-35129800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:35129200-35130000	Enhancers	HMEC	breast
12	chr15:35129200-35130000	Enhancers	HUVEC	blood vessel
13	chr15:35129200-35130200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:35129200-35130200	Enhancers	Aorta	Aorta
15	chr15:35129200-35130200	Enhancers	NH-A	brain
16	chr15:35129200-35130400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:35129200-35130400	Enhancers	NHLF	lung
18	chr15:35129200-35147600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:35129400-35129600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr15:35129400-35129600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:35129400-35129600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:35129400-35130000	Enhancers	A549	lung
23	chr15:35129400-35130200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:35129400-35130200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:35129400-35130200	Enhancers	NHDF-Ad	bronchial
26	chr15:35129400-35130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:35129400-35130400	Enhancers	Osteobl	bone
28	chr15:35129400-35130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:35129400-35132800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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