Variant report

Variant	rs377659390
Chromosome Location	chr5:94619573-94619574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3341897	chr5:94618421-94620969	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	esv3408932	chr5:94619021-94621569	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94618400-94620000	Enhancers	Fetal Brain Male	brain
2	chr5:94618400-94621200	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr5:94618600-94621600	Active TSS	Brain Angular Gyrus	brain
4	chr5:94618800-94619600	Active TSS	Right Ventricle	heart
5	chr5:94618800-94620600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr5:94618800-94620600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:94618800-94620800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr5:94618800-94620800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:94618800-94620800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr5:94619000-94619600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr5:94619000-94619600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr5:94619000-94619600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:94619000-94619600	Bivalent Enhancer	Liver	Liver
14	chr5:94619000-94619600	Bivalent Enhancer	Esophagus	oesophagus
15	chr5:94619000-94619600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr5:94619000-94619600	Bivalent Enhancer	Fetal Stomach	stomach
17	chr5:94619000-94619600	Bivalent Enhancer	Fetal Thymus	thymus
18	chr5:94619000-94619600	Enhancers	Gastric	stomach
19	chr5:94619000-94619600	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
20	chr5:94619000-94619600	Bivalent Enhancer	NH-A	brain
21	chr5:94619000-94620600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:94619000-94620800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:94619000-94620800	Bivalent/Poised TSS	NHDF-Ad	bronchial
24	chr5:94619000-94621200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr5:94619000-94621400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
26	chr5:94619000-94621400	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr5:94619200-94619600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:94619200-94619600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
29	chr5:94619200-94619600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr5:94619200-94619600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:94619200-94619600	Active TSS	Brain Anterior Caudate	brain
32	chr5:94619200-94619600	Bivalent/Poised TSS	Psoas Muscle	Psoas
33	chr5:94619200-94619600	Active TSS	Right Atrium	heart
34	chr5:94619200-94620400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:94619200-94620400	Bivalent/Poised TSS	NHEK	skin
36	chr5:94619200-94620600	Active TSS	H1 Cell Line	embryonic stem cell
37	chr5:94619200-94620600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
38	chr5:94619200-94620600	Active TSS	Duodenum Mucosa	Duodenum
39	chr5:94619200-94620600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
40	chr5:94619200-94620600	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr5:94619200-94620600	Bivalent/Poised TSS	Thymus	Thymus
42	chr5:94619200-94620800	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr5:94619200-94620800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:94619200-94620800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr5:94619200-94620800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
46	chr5:94619200-94621000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr5:94619200-94621200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:94619200-94621200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:94619200-94621200	Active TSS	Brain Substantia Nigra	brain
50	chr5:94619200-94621400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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