Variant report

Variant	rs377680815
Chromosome Location	chr17:66884062-66884063
allele	-/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv908695	chr17:66865583-66904001	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1061151	chr17:66881617-66973917	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3377863	chr17:66883257-66885205	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66869200-66903400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66877000-66886200	Weak transcription	Colonic Mucosa	Colon
3	chr17:66877000-66886600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr17:66877000-66889000	Weak transcription	Spleen	Spleen
5	chr17:66877000-66906200	Weak transcription	Fetal Stomach	stomach
6	chr17:66877200-66887400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:66877600-66888400	Strong transcription	Liver	Liver
8	chr17:66877600-66893400	Weak transcription	Brain Anterior Caudate	brain
9	chr17:66877800-66918200	Weak transcription	Fetal Brain Male	brain
10	chr17:66878200-66889400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr17:66878200-66899200	Weak transcription	Osteobl	bone
12	chr17:66878400-66901000	Weak transcription	Brain Angular Gyrus	brain
13	chr17:66879800-66892600	Weak transcription	Fetal Muscle Leg	muscle
14	chr17:66879800-66897000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr17:66880000-66893400	Weak transcription	Brain Hippocampus Middle	brain
16	chr17:66881000-66903200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr17:66881200-66893400	Weak transcription	Brain Substantia Nigra	brain
18	chr17:66881200-66904200	Weak transcription	Psoas Muscle	Psoas
19	chr17:66881400-66892800	Weak transcription	Fetal Heart	heart
20	chr17:66881400-66893600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr17:66881400-66893800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:66881400-66898800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:66881400-66906400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr17:66881400-66906400	Weak transcription	Right Ventricle	heart
25	chr17:66881600-66893000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr17:66882000-66897600	Weak transcription	Left Ventricle	heart
27	chr17:66882800-66890800	Strong transcription	Fetal Lung	lung
28	chr17:66883400-66890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:66883400-66891800	Weak transcription	Aorta	Aorta
30	chr17:66883600-66885800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr17:66883800-66886000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr17:66883800-66886000	Weak transcription	Adipose Nuclei	Adipose
33	chr17:66883800-66894000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr17:66884000-66888400	Weak transcription	Ovary	ovary

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