The 2.0 version of rSNPBase

Variant report

Variant rs377691100
Chromosome Location chr5:54040870-54040871
allele -/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:54034600-54041400 Weak transcription Lung lung
2 chr5:54036400-54041600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr5:54036400-54042000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr5:54036800-54041800 Enhancers Primary T helper 17 cells PMA-I stimulated --
5 chr5:54036800-54044800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:54037200-54042800 Weak transcription Gastric stomach
7 chr5:54037400-54041000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr5:54037400-54041200 Enhancers NHEK skin
9 chr5:54037600-54041200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:54037600-54041200 Enhancers NH-A brain
11 chr5:54037600-54041400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr5:54037600-54042000 Enhancers Primary monocytes fromperipheralblood blood
13 chr5:54037800-54041600 Enhancers NHLF lung
14 chr5:54038200-54041200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr5:54038200-54041400 Enhancers Placenta Amnion Placenta Amnion
16 chr5:54038200-54041600 Enhancers HSMM muscle
17 chr5:54038200-54041800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr5:54038200-54041800 Enhancers Primary T helper cells PMA-I stimulated --
19 chr5:54038200-54041800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
20 chr5:54038200-54041800 Enhancers Primary T killer memory cells from peripheral blood blood
21 chr5:54038200-54041800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr5:54038200-54041800 Enhancers Fetal Heart heart
23 chr5:54038200-54042000 Enhancers Primary T cells fromperipheralblood blood
24 chr5:54038200-54042600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr5:54038400-54041600 Enhancers Primary T helper cells fromperipheralblood blood
26 chr5:54038400-54041800 Enhancers Fetal Lung lung
27 chr5:54038400-54042800 Enhancers Fetal Adrenal Gland Adrenal Gland
28 chr5:54038600-54041600 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr5:54038600-54041600 Weak transcription Left Ventricle heart
30 chr5:54038600-54041800 Enhancers Duodenum Mucosa Duodenum
31 chr5:54038800-54041200 Enhancers Hela-S3 cervix
32 chr5:54038800-54041400 Weak transcription Pancreas Pancrea
33 chr5:54039000-54041600 Enhancers Primary hematopoietic stem cells blood
34 chr5:54039000-54042000 Enhancers Dnd41 blood
35 chr5:54039400-54041800 Enhancers Primary mononuclear cells fromperipheralblood Blood
36 chr5:54039600-54041400 Enhancers Primary B cells from cord blood blood
37 chr5:54039600-54041600 Enhancers Primary B cells from peripheral blood blood
38 chr5:54039600-54041800 Enhancers Fetal Thymus thymus
39 chr5:54039600-54042000 Enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr5:54039600-54042600 Enhancers Spleen Spleen
41 chr5:54039800-54041200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
42 chr5:54039800-54041400 Enhancers Fetal Intestine Small intestine
43 chr5:54039800-54041400 Enhancers Skeletal Muscle Male skeletal muscle
44 chr5:54039800-54041600 Enhancers Fetal Intestine Large intestine
45 chr5:54039800-54041800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr5:54040000-54041600 Weak transcription Small Intestine intestine
47 chr5:54040000-54042000 Enhancers NHDF-Ad bronchial
48 chr5:54040000-54043000 Weak transcription Right Ventricle heart
49 chr5:54040200-54041000 Enhancers HepG2 liver
50 chr5:54040200-54044600 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015