Variant report

Variant	rs377691984
Chromosome Location	chr20:24449907-24449908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3400513	chr20:24449177-24451725	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24448000-24450000	Bivalent Enhancer	Fetal Thymus	thymus
2	chr20:24449200-24451200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:24449200-24452200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:24449400-24450000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
5	chr20:24449400-24450000	Enhancers	Fetal Brain Male	brain
6	chr20:24449400-24450000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
7	chr20:24449400-24450400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr20:24449400-24451000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:24449400-24451000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr20:24449400-24451000	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr20:24449400-24451600	Bivalent/Poised TSS	Colonic Mucosa	Colon
12	chr20:24449400-24452200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr20:24449400-24452200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr20:24449400-24452200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr20:24449400-24452200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr20:24449400-24452200	Active TSS	Brain Angular Gyrus	brain
17	chr20:24449400-24452200	Active TSS	Brain Cingulate Gyrus	brain
18	chr20:24449400-24452400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr20:24449400-24452400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:24449400-24452400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr20:24449600-24450000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
24	chr20:24449600-24450000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
27	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr20:24449600-24450000	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
30	chr20:24449600-24450600	Active TSS	Colon Smooth Muscle	Colon
31	chr20:24449600-24450600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
32	chr20:24449600-24450600	Active TSS	Stomach Smooth Muscle	stomach
33	chr20:24449600-24450800	Active TSS	H9 Cell Line	embryonic stem cell
34	chr20:24449600-24450800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr20:24449600-24451000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr20:24449600-24451000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr20:24449600-24451000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr20:24449600-24451800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
39	chr20:24449600-24452000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr20:24449600-24452000	Active TSS	Ovary	ovary
41	chr20:24449600-24452200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr20:24449600-24452200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr20:24449600-24452200	Active TSS	Brain Substantia Nigra	brain
44	chr20:24449600-24452400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
45	chr20:24449600-24452400	Active TSS	Brain Anterior Caudate	brain
46	chr20:24449800-24450000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr20:24449800-24450000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr20:24449800-24450000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr20:24449800-24450000	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
50	chr20:24449800-24450000	Bivalent/Poised TSS	Fetal Intestine Small	intestine

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