Variant report

Variant	rs377700147
Chromosome Location	chr15:41852828-41852829
allele	-/GTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41851238-41852973	K562	blood:	n/a	n/a
2	POLR2A	chr15:41852819-41853144	H1-hESC	embryonic stem cell:	n/a	n/a
3	ZNF263	chr15:41851058-41853318	HEK293-T-REx	kidney:	n/a	chr15:41851388-41851409 chr15:41851348-41851369 chr15:41851896-41851905 chr15:41851160-41851169
4	MAX	chr15:41852814-41852974	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41851361..41854178-chr15:42065182..42067599,2	K562	blood:
2	chr15:41851029..41853126-chr15:41899971..41902269,2	K562	blood:
3	chr15:41779821..41781548-chr15:41852797..41854697,2	MCF-7	breast:
4	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
5	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
6	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
7	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
8	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
9	chr15:41850576..41853126-chr15:41900769..41903357,2	K562	blood:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000092445	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000174197	Chromatin interaction
ENSG00000260926	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000137825	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3311131	chr15:41851466-41853360	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3311132	chr15:41851466-41853360	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41850000-41853000	Enhancers	Fetal Heart	heart
2	chr15:41850200-41853200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:41850800-41853000	Active TSS	Fetal Kidney	kidney
4	chr15:41851800-41853000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr15:41851800-41853000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:41851800-41853000	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr15:41851800-41853000	Flanking Active TSS	Esophagus	oesophagus
8	chr15:41851800-41853000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr15:41851800-41853200	Flanking Active TSS	Dnd41	blood
10	chr15:41852000-41853000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr15:41852000-41853200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:41852000-41853400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:41852000-41853400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:41852000-41853400	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr15:41852000-41853800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:41852200-41853000	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr15:41852200-41853000	Enhancers	Left Ventricle	heart
18	chr15:41852200-41853000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
19	chr15:41852200-41853200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr15:41852200-41853200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:41852200-41853200	Flanking Active TSS	Fetal Brain Female	brain
22	chr15:41852200-41854000	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr15:41852200-41854400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:41852200-41854400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
26	chr15:41852400-41853000	Bivalent Enhancer	Colonic Mucosa	Colon
27	chr15:41852400-41853000	Enhancers	Lung	lung
28	chr15:41852400-41853000	Enhancers	Spleen	Spleen
29	chr15:41852400-41853200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:41852400-41853200	Enhancers	Gastric	stomach
31	chr15:41852400-41853400	Enhancers	Right Ventricle	heart
32	chr15:41852400-41853400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
33	chr15:41852400-41853600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:41852400-41853600	Enhancers	Pancreas	Pancrea
35	chr15:41852400-41853800	Weak transcription	A549	lung
36	chr15:41852400-41854200	Enhancers	Right Atrium	heart
37	chr15:41852400-41854200	Weak transcription	HSMMtube	muscle
38	chr15:41852400-41854200	Weak transcription	Osteobl	bone
39	chr15:41852400-41854400	Enhancers	Placenta	Placenta
40	chr15:41852400-41854600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:41852400-41854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr15:41852400-41855200	Weak transcription	HSMM	muscle
43	chr15:41852400-41859600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:41852400-41860600	Weak transcription	HUVEC	blood vessel
45	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:41852600-41853000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:41852600-41853000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:41852600-41853200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:41852600-41853200	Enhancers	NH-A	brain
50	chr15:41852600-41853400	Enhancers	H9 Cell Line	embryonic stem cell

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