Variant report

Variant	rs377742480
Chromosome Location	chr6:12196859-12196860
allele	-/TCCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2763534	chr6:12196490-12198774	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12176200-12203400	Weak transcription	A549	lung
2	chr6:12185800-12200800	Weak transcription	Aorta	Aorta
3	chr6:12196000-12197000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:12196200-12197000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:12196200-12197000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:12196200-12197000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:12196200-12197000	Enhancers	NHEK	skin
8	chr6:12196400-12197000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:12196400-12197200	Enhancers	HSMM	muscle
10	chr6:12196600-12197000	Enhancers	HUVEC	blood vessel
11	chr6:12196600-12197200	Enhancers	NH-A	brain
12	chr6:12196800-12200600	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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