Variant report

Variant	rs3777572
Chromosome Location	chr6:45902252-45902253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45896169..45897673-chr6:45900583..45902413,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3777580	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934516	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv517891	chr6:45899823-45915088	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
3	chr6:45895400-45910800	Weak transcription	Placenta	Placenta
4	chr6:45898200-45904400	Weak transcription	Spleen	Spleen
5	chr6:45898600-45914600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:45898600-45916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:45898800-45903400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:45898800-45904200	Weak transcription	Colonic Mucosa	Colon
9	chr6:45898800-45911000	Weak transcription	Adipose Nuclei	Adipose
10	chr6:45898800-45919200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:45899000-45910600	Weak transcription	Fetal Heart	heart
12	chr6:45899200-45910000	Strong transcription	Fetal Intestine Small	intestine
13	chr6:45899400-45905400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:45899800-45908000	Weak transcription	Lung	lung
15	chr6:45900200-45904800	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr6:45901200-45903200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:45901400-45902400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:45901400-45905000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:45901600-45902400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:45901800-45902600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:45901800-45902600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:45901800-45903000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:45901800-45907800	Weak transcription	Right Ventricle	heart
24	chr6:45902000-45902600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:45902000-45903000	Weak transcription	Fetal Intestine Large	intestine
26	chr6:45902000-45904000	Weak transcription	Left Ventricle	heart
27	chr6:45902200-45902600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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