Variant report

Variant	rs3777896
Chromosome Location	chr6:134300757-134300758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134293697..134297795-chr6:134300055..134303954,5	K562	blood:
2	chr6:134299476..134301800-chr6:134413049..134415784,2	K562	blood:
3	chr6:134283774..134285456-chr6:134299737..134302262,2	K562	blood:
4	chr6:134298988..134300758-chr6:134423394..134426369,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2239558	0.92[EUR][1000 genomes]
rs2273097	0.98[EUR][1000 genomes]
rs34569027	0.96[EUR][1000 genomes]
rs3777894	0.96[EUR][1000 genomes]
rs3777899	1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs41286224	0.98[EUR][1000 genomes]
rs4896017	0.96[EUR][1000 genomes]
rs56011629	0.96[EUR][1000 genomes]
rs57486657	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60898069	0.96[EUR][1000 genomes]
rs6902440	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs73548792	0.96[EUR][1000 genomes]
rs73774169	0.96[EUR][1000 genomes]
rs73774170	0.96[EUR][1000 genomes]
rs9483631	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs9483632	0.90[EUR][1000 genomes]
rs9483634	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483635	0.96[EUR][1000 genomes]
rs9483639	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493768	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs9493770	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9493771	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs9493772	0.96[EUR][1000 genomes]
rs9493773	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493774	0.96[EUR][1000 genomes]
rs9493777	0.96[EUR][1000 genomes]
rs9493780	0.96[EUR][1000 genomes]
rs9493786	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3777896	TBPL1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
2	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
3	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
4	chr6:134278000-134303600	Weak transcription	Dnd41	blood
5	chr6:134280400-134304200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:134280600-134312200	Weak transcription	Lung	lung
7	chr6:134282600-134302000	Weak transcription	Placenta	Placenta
8	chr6:134283200-134305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:134286800-134304200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:134288400-134306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:134289800-134304200	Weak transcription	Fetal Stomach	stomach
14	chr6:134290000-134304200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:134290200-134302400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
17	chr6:134291200-134302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:134291800-134304000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:134292600-134303000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:134292600-134304400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:134294400-134304200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:134294600-134302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:134294600-134302400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:134294600-134303600	Weak transcription	Primary T cells from cord blood	blood
25	chr6:134294600-134304200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:134294800-134302400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:134295000-134301000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:134295000-134301200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:134295000-134302600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:134295000-134302800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:134295000-134303000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:134295000-134303800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:134295000-134303800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
35	chr6:134295200-134311800	Weak transcription	Brain Germinal Matrix	brain
36	chr6:134296400-134304400	Weak transcription	Pancreas	Pancrea
37	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:134297200-134304200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:134297400-134301400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:134297400-134302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:134297400-134302400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:134297600-134304800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:134297800-134304200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:134298000-134302400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:134298400-134304200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:134298600-134301400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:134298600-134301600	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr6:134298800-134300800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:134298800-134300800	Enhancers	Hela-S3	cervix
50	chr6:134298800-134301000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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