Variant report

Variant	rs3778871
Chromosome Location	chr7:150670772-150670773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150661035..150665420-chr7:150665668..150673641,9	MCF-7	breast:
2	chr7:150670653..150672364-chr7:150715220..150718108,2	MCF-7	breast:
3	chr7:150670110..150672033-chr7:150810426..150812934,2	MCF-7	breast:
4	chr7:150668944..150671861-chr7:150941507..150943455,2	MCF-7	breast:
5	chr7:150668903..150671561-chr7:150807024..150809833,2	MCF-7	breast:
6	chr7:150670317..150671058-chr7:150682793..150683490,2	K562	blood:
7	chr7:150654869..150656816-chr7:150670691..150673405,2	MCF-7	breast:
8	chr7:150661173..150665225-chr7:150669426..150673358,7	MCF-7	breast:
9	chr7:150669264..150677850-chr7:150681612..150689209,13	MCF-7	breast:
10	chr7:150670321..150673113-chr7:150933266..150935781,2	MCF-7	breast:
11	chr7:150634464..150636964-chr7:150670317..150672404,2	MCF-7	breast:
12	chr7:150670508..150673387-chr7:150723224..150725668,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197150	Chromatin interaction
ENSG00000181652	Chromatin interaction
ENSG00000211517	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000164867	Chromatin interaction
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
12	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
13	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
15	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv609002	chr7:150667210-150678080	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
17	nsv889470	chr7:150667210-150696111	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
18	esv3355513	chr7:150670544-150673392	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150658200-150670800	Enhancers	Rectal Smooth Muscle	rectum
2	chr7:150664400-150673600	Enhancers	Fetal Lung	lung
3	chr7:150664600-150674000	Enhancers	Fetal Brain Male	brain
4	chr7:150665200-150671800	Genic enhancers	Fetal Stomach	stomach
5	chr7:150665400-150671800	Enhancers	Left Ventricle	heart
6	chr7:150665600-150671200	Enhancers	Right Ventricle	heart
7	chr7:150666200-150670800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:150666400-150671400	Enhancers	Fetal Thymus	thymus
9	chr7:150666800-150671400	Enhancers	Fetal Intestine Large	intestine
10	chr7:150667200-150672400	Enhancers	Fetal Heart	heart
11	chr7:150667600-150670800	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr7:150668000-150671200	Enhancers	Brain Anterior Caudate	brain
13	chr7:150668200-150671800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr7:150668400-150670800	Enhancers	Placenta	Placenta
15	chr7:150668400-150671600	Enhancers	Right Atrium	heart
16	chr7:150668800-150671000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:150668800-150671200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:150669000-150670800	Weak transcription	Gastric	stomach
19	chr7:150669000-150671200	Weak transcription	K562	blood
20	chr7:150669200-150670800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:150669200-150670800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:150669200-150671200	Enhancers	Brain Germinal Matrix	brain
23	chr7:150669200-150671800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr7:150669600-150670800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:150669600-150670800	Enhancers	Brain Cingulate Gyrus	brain
26	chr7:150669600-150670800	Weak transcription	HSMM	muscle
27	chr7:150669600-150671000	Weak transcription	Esophagus	oesophagus
28	chr7:150669600-150671200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:150669600-150671200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr7:150669600-150671200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr7:150669600-150671400	Weak transcription	Brain Angular Gyrus	brain
32	chr7:150669600-150671800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:150669600-150671800	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:150669600-150671800	Weak transcription	Small Intestine	intestine
35	chr7:150669800-150670800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:150669800-150671200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:150669800-150671200	Weak transcription	Fetal Brain Female	brain
38	chr7:150669800-150671200	Weak transcription	Ovary	ovary
39	chr7:150669800-150671800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:150669800-150671800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:150669800-150671800	Enhancers	Colon Smooth Muscle	Colon
42	chr7:150669800-150671800	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr7:150670000-150671000	Weak transcription	Lung	lung
44	chr7:150670000-150671200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr7:150670000-150672400	Weak transcription	HSMMtube	muscle
46	chr7:150670200-150671200	Enhancers	Thymus	Thymus
47	chr7:150670200-150671400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr7:150670200-150671400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr7:150670200-150671800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
50	chr7:150670400-150671000	Bivalent Enhancer	Primary T cells from cord blood	blood

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