Variant report

Variant	rs3780222
Chromosome Location	chr9:18889212-18889213
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10756996	0.80[CHB][hapmap]
rs11792586	0.93[ASN][1000 genomes]
rs12003812	0.84[ASN][1000 genomes]
rs1359843	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2164001	0.80[JPT][hapmap]
rs34099646	0.89[ASN][1000 genomes]
rs3866508	0.80[ASN][1000 genomes]
rs4977454	0.85[CEU][hapmap]
rs6475265	0.85[CEU][hapmap]
rs731370	0.81[CEU][hapmap]
rs934482	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18878600-18895600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:18879800-18889800	Weak transcription	HSMMtube	muscle
3	chr9:18885200-18889600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18885800-18896400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:18886200-18889600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:18886400-18889800	Weak transcription	NHLF	lung
7	chr9:18887000-18890000	Strong transcription	NH-A	brain
8	chr9:18887200-18891000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:18887800-18889800	Strong transcription	Aorta	Aorta
10	chr9:18887800-18889800	Strong transcription	HSMM	muscle
11	chr9:18888000-18891000	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:18888000-18892400	Weak transcription	Pancreas	Pancrea
13	chr9:18888200-18889800	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr9:18888200-18891200	Enhancers	Fetal Thymus	thymus
15	chr9:18888400-18891200	Enhancers	GM12878-XiMat	blood
16	chr9:18888600-18890200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:18888600-18894600	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:18888600-18896400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:18888800-18889600	Strong transcription	Osteobl	bone
20	chr9:18888800-18889800	Strong transcription	NHDF-Ad	bronchial
21	chr9:18888800-18890000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:18888800-18890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:18888800-18890200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:18888800-18895400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:18889000-18890000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:18889000-18893400	Weak transcription	Fetal Intestine Small	intestine
27	chr9:18889200-18890600	Genic enhancers	Fetal Stomach	stomach
28	chr9:18889200-18891200	Genic enhancers	Fetal Muscle Leg	muscle
29	chr9:18889200-18901200	Weak transcription	Colonic Mucosa	Colon

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