Variant report

Variant	rs3780436
Chromosome Location	chr9:101094363-101094364
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101001678..101003268-chr9:101092460..101094630,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10985905	0.80[ASN][1000 genomes]
rs10985909	0.92[ASN][1000 genomes]
rs12553770	0.83[ASN][1000 genomes]
rs72603691	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101087400-101096000	Weak transcription	Osteobl	bone
2	chr9:101087400-101096400	Weak transcription	NH-A	brain
3	chr9:101089000-101096000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
5	chr9:101091000-101095400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101091200-101095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:101091400-101094400	Enhancers	NHDF-Ad	bronchial
8	chr9:101092000-101096000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:101092200-101095800	Weak transcription	HMEC	breast
10	chr9:101092600-101097000	Weak transcription	Fetal Intestine Large	intestine
11	chr9:101093200-101094400	Enhancers	Stomach Smooth Muscle	stomach
12	chr9:101093200-101094600	Enhancers	K562	blood
13	chr9:101093800-101094400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:101093800-101094400	Enhancers	Brain Angular Gyrus	brain
15	chr9:101093800-101094400	Enhancers	Lung	lung
16	chr9:101093800-101095000	Enhancers	Spleen	Spleen
17	chr9:101094000-101095400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:101094200-101094800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:101094200-101095200	Weak transcription	NHLF	lung
20	chr9:101094200-101095400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:101094200-101095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:101094200-101096200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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