Variant report

Variant	rs3780750
Chromosome Location	chr9:136762375-136762376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136757547..136761055-chr9:136762339..136765392,5	MCF-7	breast:
2	chr9:136761107..136765388-chr9:136855168..136859515,5	MCF-7	breast:
3	chr9:136747201..136749377-chr9:136761194..136763291,2	MCF-7	breast:
4	chr9:136737182..136738921-chr9:136761146..136762835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10993844	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2519115	1.00[JPT][hapmap]
rs2519766	1.00[JPT][hapmap]
rs2519767	1.00[JPT][hapmap]
rs2519768	1.00[JPT][hapmap]
rs2519772	0.90[JPT][hapmap]
rs2519775	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2519777	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2519778	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2519779	0.88[ASN][1000 genomes]
rs2519780	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2789853	0.90[JPT][hapmap]
rs2873890	0.89[ASN][1000 genomes]
rs3780751	1.00[JPT][hapmap]
rs3780752	1.00[JPT][hapmap]
rs4406471	1.00[JPT][hapmap]
rs4436183	0.85[ASN][1000 genomes]
rs56946389	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73561834	0.97[ASN][1000 genomes]
rs739448	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv894126	chr9:136747832-136779153	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv894127	chr9:136747832-136811772	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1798102	chr9:136753246-136771319	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1832030	chr9:136753246-136785840	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1829795	chr9:136753246-136787253	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv894129	chr9:136754076-136779153	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv437652	chr9:136758586-136767301	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv615737	chr9:136759210-136762800	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv466624	chr9:136759587-136771319	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv615738	chr9:136759587-136771319	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv523970	chr9:136760851-136762800	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv973840	chr9:136761766-136773741	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv615739	chr9:136761938-136790282	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv521178	chr9:136762232-136767301	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
3	chr9:136747600-136780800	Weak transcription	Right Atrium	heart
4	chr9:136748800-136770600	Weak transcription	Esophagus	oesophagus
5	chr9:136751600-136768200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:136753000-136813200	Weak transcription	Aorta	Aorta
7	chr9:136753800-136762400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:136754200-136762600	Weak transcription	Fetal Lung	lung
9	chr9:136754800-136765200	Weak transcription	GM12878-XiMat	blood
10	chr9:136755400-136769400	Weak transcription	Fetal Brain Female	brain
11	chr9:136755400-136769600	Weak transcription	Brain Anterior Caudate	brain
12	chr9:136755600-136762400	Weak transcription	HSMMtube	muscle
13	chr9:136755600-136769600	Weak transcription	Fetal Brain Male	brain
14	chr9:136755600-136771800	Weak transcription	HMEC	breast
15	chr9:136755600-136776000	Weak transcription	NHEK	skin
16	chr9:136755800-136762800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:136755800-136762800	Weak transcription	NHLF	lung
18	chr9:136756200-136762400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:136756200-136772600	Weak transcription	NH-A	brain
20	chr9:136756800-136762600	Weak transcription	HSMM	muscle
21	chr9:136758000-136763000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:136758200-136779000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:136758400-136762400	Weak transcription	Hela-S3	cervix
24	chr9:136758400-136772200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:136758400-136778800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:136758400-136781000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:136758600-136762600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:136758600-136763200	Enhancers	HepG2	liver
29	chr9:136758600-136765400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:136758800-136780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr9:136759000-136762600	Weak transcription	Spleen	Spleen
32	chr9:136759000-136764800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:136759400-136772200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:136759600-136762400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:136760000-136772400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:136760200-136762400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:136760200-136762600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:136760200-136762600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:136760200-136770600	Weak transcription	Lung	lung
40	chr9:136760400-136762400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:136760400-136762400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:136760400-136762600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:136760400-136762800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:136760600-136769600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:136760600-136772400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:136760800-136762400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:136760800-136762400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:136760800-136762600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:136760800-136763000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:136760800-136765400	Weak transcription	Primary B cells from cord blood	blood

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