Variant report

Variant	rs3781263
Chromosome Location	chr10:96352967-96352968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96339432..96341136-chr10:96352569..96355112,2	K562	blood:
2	chr10:96352629..96354716-chr10:96356087..96359536,3	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11188018	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11188024	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11188029	0.92[ASN][1000 genomes]
rs11188034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188035	1.00[ASN][1000 genomes]
rs12266316	1.00[ASN][1000 genomes]
rs1409654	1.00[CHB][hapmap]
rs17878649	1.00[CHB][hapmap]
rs2296679	1.00[CHB][hapmap]
rs2296682	1.00[CHB][hapmap]
rs2296684	1.00[CHB][hapmap]
rs7082335	1.00[CHB][hapmap]
rs73329634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73329662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73329685	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7907335	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7909319	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7909713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7912667	1.00[CHB][hapmap]
rs7923806	1.00[CHB][hapmap]
rs7924292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv975786	chr10:96352319-96359053	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
3	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:96306400-96371000	Weak transcription	Ovary	ovary
6	chr10:96306600-96353800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:96307000-96375000	Weak transcription	Osteobl	bone
12	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
13	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
14	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:96309400-96354000	Weak transcription	K562	blood
18	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:96312200-96354000	Weak transcription	Gastric	stomach
21	chr10:96312800-96372200	Strong transcription	Dnd41	blood
22	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
24	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
25	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:96316200-96357600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:96321000-96353200	Weak transcription	Fetal Intestine Large	intestine
30	chr10:96324000-96356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:96324200-96353800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:96325800-96376000	Weak transcription	NHLF	lung
35	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
36	chr10:96331200-96361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:96332400-96359200	Weak transcription	Left Ventricle	heart
38	chr10:96335400-96357200	Weak transcription	Small Intestine	intestine
39	chr10:96338800-96354400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:96339600-96353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:96339600-96353600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:96345400-96355000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:96345400-96360000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:96345400-96360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:96346200-96353800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:96346200-96355200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:96346400-96360000	Strong transcription	Fetal Thymus	thymus

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