Variant report

Variant	rs3781555
Chromosome Location	chr10:117997286-117997287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11197615	0.84[EUR][1000 genomes]
rs3781557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73372494	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117976800-117999800	Weak transcription	HSMM	muscle
2	chr10:117989600-117999600	Weak transcription	HSMMtube	muscle
3	chr10:117992600-117999800	Weak transcription	Fetal Lung	lung
4	chr10:117995000-117998200	Enhancers	Fetal Stomach	stomach
5	chr10:117995800-118007000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117996800-117997800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:117996800-117999800	Enhancers	Liver	Liver
8	chr10:117997000-117997600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr10:117997200-117997600	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr10:117997200-117997600	Enhancers	Gastric	stomach
11	chr10:117997200-117997800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:117997200-117997800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:117997200-117998000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:117997200-117998000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:117997200-117998600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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