Variant report

Variant	rs3782672
Chromosome Location	chr12:10789169-10789170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10788789..10790394-chr12:10825360..10827046,2	MCF-7	breast:
2	chr12:10787504..10789680-chr12:10803870..10805505,2	MCF-7	breast:
3	chr12:10782352..10785232-chr12:10787939..10791326,3	MCF-7	breast:
4	chr12:10783181..10785350-chr12:10788127..10790504,2	K562	blood:

Variant related genes	Relation type
ENSG00000060140	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3759259	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv607	chr12:10776867-10821535	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3782672	TAS2R20	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10766600-10789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:10766600-10794400	Weak transcription	Gastric	stomach
3	chr12:10766800-10789400	Weak transcription	Esophagus	oesophagus
4	chr12:10779800-10790000	Strong transcription	HUVEC	blood vessel
5	chr12:10782200-10791000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:10782400-10789400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:10785400-10792600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:10787000-10793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr12:10787600-10789800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr12:10787600-10794000	Weak transcription	NHEK	skin
11	chr12:10787600-10794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:10787600-10794200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:10787800-10792800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:10787800-10794000	Weak transcription	HMEC	breast
15	chr12:10787800-10797800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:10788000-10792400	Weak transcription	Osteobl	bone
17	chr12:10788000-10794000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:10788000-10794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:10788200-10789200	Weak transcription	HSMMtube	muscle
20	chr12:10788400-10791000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr12:10788600-10789800	Enhancers	Placenta	Placenta
22	chr12:10788600-10797400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:10788800-10789200	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr12:10788800-10789200	Flanking Active TSS	Stomach Mucosa	stomach
25	chr12:10788800-10792600	Weak transcription	NHDF-Ad	bronchial
26	chr12:10788800-10793400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:10789000-10789400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr12:10789000-10789600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr12:10789000-10789800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr12:10789000-10789800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr12:10789000-10789800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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