Variant report

Variant	rs3782682
Chromosome Location	chr12:8191390-8191391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:8183829..8185569-chr12:8189686..8192591,2	K562	blood:
2	chr12:8188281..8192732-chr12:8193522..8196171,4	K562	blood:
3	chr12:8189586..8192234-chr12:8230888..8234565,4	K562	blood:
4	chr12:8190238..8192234-chr12:8232892..8234832,2	K562	blood:
5	chr12:8184049..8188047-chr12:8189263..8193320,7	MCF-7	breast:
6	chr12:8189818..8192986-chr12:8193522..8196804,4	K562	blood:

Variant related genes	Relation type
ENSG00000089818	Chromatin interaction
ENSG00000065970	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11567778	1.00[ASW][hapmap]
rs11567802	1.00[ASW][hapmap]
rs11829998	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11835082	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11837108	1.00[ASN][1000 genomes]
rs12580580	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12580604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3759281	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048545	chr12:7778760-8608231	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv541368	chr12:7778760-8608231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	esv1795892	chr12:7856819-8508693	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	esv2758292	chr12:7856819-8623987	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	esv2759877	chr12:7856819-8623987	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv428270	chr12:7856819-8623987	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
7	esv1797934	chr12:7985460-8214261	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	esv1793572	chr12:7995827-8568422	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1040972	chr12:8003413-8266291	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv541388	chr12:8003413-8266291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	nsv916941	chr12:8003501-8608220	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
12	nsv1045521	chr12:8123225-8242846	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
13	nsv1040958	chr12:8177050-8309724	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv541396	chr12:8177050-8309724	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8186200-8191400	Enhancers	Small Intestine	intestine
2	chr12:8186600-8191800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:8186600-8192800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:8186800-8191800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:8186800-8191800	Enhancers	Lung	lung
6	chr12:8186800-8192200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:8187000-8192000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:8187200-8192000	Enhancers	Primary B cells from peripheral blood	blood
9	chr12:8187200-8192000	Enhancers	Liver	Liver
10	chr12:8187600-8192600	Genic enhancers	Fetal Muscle Leg	muscle
11	chr12:8187800-8192000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:8188000-8192200	Enhancers	Stomach Mucosa	stomach
13	chr12:8188200-8191600	Enhancers	Right Ventricle	heart
14	chr12:8189000-8191800	Enhancers	Gastric	stomach
15	chr12:8189600-8191400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr12:8189800-8191600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:8189800-8191600	Enhancers	HepG2	liver
18	chr12:8189800-8191800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr12:8189800-8192000	Genic enhancers	Fetal Stomach	stomach
20	chr12:8190000-8191800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr12:8190000-8192000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:8190000-8192000	Flanking Active TSS	Fetal Heart	heart
23	chr12:8190000-8192000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr12:8190200-8191400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr12:8190200-8191800	Genic enhancers	Primary B cells from cord blood	blood
26	chr12:8190200-8191800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr12:8190200-8191800	Flanking Active TSS	NHEK	skin
28	chr12:8190200-8192000	Enhancers	Primary hematopoietic stem cells	blood
29	chr12:8190400-8191800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr12:8190400-8192000	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr12:8190600-8191600	Enhancers	Placenta	Placenta
32	chr12:8190600-8191800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:8190600-8191800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:8190600-8191800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr12:8190600-8191800	Enhancers	Fetal Intestine Large	intestine
36	chr12:8190600-8191800	Enhancers	Fetal Muscle Trunk	muscle
37	chr12:8190600-8192000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:8190600-8192000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr12:8190600-8192000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr12:8190800-8191600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr12:8190800-8191600	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr12:8190800-8191600	Flanking Active TSS	Colonic Mucosa	Colon
43	chr12:8190800-8191800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr12:8190800-8191800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr12:8190800-8191800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:8190800-8191800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr12:8190800-8191800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr12:8190800-8191800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr12:8190800-8191800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:8190800-8191800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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