Variant report

Variant	rs3782978
Chromosome Location	chr13:48892058-48892059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48876409..48879041-chr13:48891404..48895274,4	K562	blood:
2	chr13:48890081..48892868-chr13:48894864..48897865,3	K562	blood:
3	chr13:48886217..48888440-chr13:48889572..48892484,2	K562	blood:
4	chr13:48890081..48892868-chr13:48895094..48897865,2	K562	blood:

Variant related genes	Relation type
ENSG00000139687	Chromatin interaction
ENSG00000231473	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429306	chr13:48891919-48892212	Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48879400-48894200	Weak transcription	A549	lung
2	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:48880200-48892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:48880200-48892200	Weak transcription	Fetal Kidney	kidney
5	chr13:48880200-48892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:48880200-48892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr13:48880200-48892600	Weak transcription	NH-A	brain
8	chr13:48880200-48893800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr13:48880200-48894400	Weak transcription	Brain Anterior Caudate	brain
10	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
11	chr13:48880400-48892400	Weak transcription	HMEC	breast
12	chr13:48880400-48892600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:48880600-48892200	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:48880600-48892200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:48880600-48892400	Weak transcription	Ovary	ovary
16	chr13:48880600-48894600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
18	chr13:48880800-48892200	Weak transcription	Colon Smooth Muscle	Colon
19	chr13:48880800-48892400	Weak transcription	Primary T cells from cord blood	blood
20	chr13:48880800-48893200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:48880800-48895200	Weak transcription	Small Intestine	intestine
22	chr13:48880800-48895600	Weak transcription	Hela-S3	cervix
23	chr13:48880800-48896200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:48881200-48892800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr13:48881200-48895600	Weak transcription	HepG2	liver
26	chr13:48882400-48892200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:48883000-48892400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:48884200-48892600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr13:48884400-48893400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr13:48884600-48892600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr13:48884600-48892800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr13:48884800-48893000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr13:48885400-48892200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr13:48886600-48892800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr13:48887000-48896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr13:48887600-48892200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr13:48887800-48892800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:48888800-48892400	Weak transcription	Brain Substantia Nigra	brain
39	chr13:48889600-48892800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr13:48889800-48892200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chr13:48890000-48894200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:48890000-48894400	ZNF genes & repeats	GM12878-XiMat	blood
43	chr13:48890000-48894800	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr13:48890200-48892800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:48890200-48894200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr13:48890200-48895000	ZNF genes & repeats	Fetal Stomach	stomach
47	chr13:48890200-48896000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
48	chr13:48890400-48892200	Genic enhancers	Lung	lung
49	chr13:48890400-48892400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:48890600-48893600	Strong transcription	NHLF	lung

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