Variant report

Variant	rs3783111
Chromosome Location	chr13:110835049-110835050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1000989	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1000990	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1562173	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1562174	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16975472	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16975491	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16975492	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1891964	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1975514	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977892	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1977893	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2005447	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2131937	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2131938	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2172725	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278673	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289799	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2289800	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2305080	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2391815	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391816	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391817	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3783105	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs3783106	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs3783107	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3783112	0.92[ASN][1000 genomes]
rs3783113	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs503053	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7325512	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7326444	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7329411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs874203	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs874204	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9515160	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9515161	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9521632	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9521633	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9521634	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9521635	0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9521636	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9521637	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9521638	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9588108	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1045170	chr13:110815422-110836716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv456116	chr13:110818598-110856153	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv563101	chr13:110818598-110856153	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1182	chr13:110829691-110875029	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
2	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:110800200-110837800	Strong transcription	NH-A	brain
5	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
8	chr13:110803200-110839800	Strong transcription	Osteobl	bone
9	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:110809200-110840000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:110810200-110866400	Strong transcription	Stomach Smooth Muscle	stomach
13	chr13:110811000-110840200	Strong transcription	HUVEC	blood vessel
14	chr13:110811800-110838800	Strong transcription	Right Ventricle	heart
15	chr13:110812000-110838800	Strong transcription	Left Ventricle	heart
16	chr13:110816200-110840400	Strong transcription	Adipose Nuclei	Adipose
17	chr13:110821000-110839400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:110822000-110839800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:110822200-110840000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:110822200-110840200	Strong transcription	Colon Smooth Muscle	Colon
21	chr13:110822800-110837800	Strong transcription	HSMM	muscle
22	chr13:110823000-110837000	Strong transcription	Rectal Smooth Muscle	rectum
23	chr13:110823000-110840000	Strong transcription	Fetal Lung	lung
24	chr13:110824600-110835800	Strong transcription	Placenta	Placenta
25	chr13:110824600-110836200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr13:110826200-110836000	Weak transcription	Fetal Heart	heart
27	chr13:110826400-110836200	Weak transcription	Esophagus	oesophagus
28	chr13:110826400-110839400	Weak transcription	Brain Substantia Nigra	brain
29	chr13:110826400-110839600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:110826400-110868200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:110826600-110835600	Strong transcription	Fetal Muscle Leg	muscle
32	chr13:110826600-110836000	Weak transcription	Brain Germinal Matrix	brain
33	chr13:110826600-110858600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr13:110826600-110866200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:110826800-110836200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr13:110826800-110836600	Strong transcription	Ovary	ovary
37	chr13:110826800-110838800	Strong transcription	Spleen	Spleen
38	chr13:110826800-110847200	Strong transcription	Aorta	Aorta
39	chr13:110826800-110868000	Weak transcription	Brain Anterior Caudate	brain
40	chr13:110827000-110835600	Strong transcription	Fetal Intestine Small	intestine
41	chr13:110827000-110839600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:110827000-110849200	Strong transcription	Fetal Stomach	stomach
43	chr13:110827600-110844200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr13:110827600-110869000	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:110827800-110838000	Weak transcription	Gastric	stomach
46	chr13:110829000-110865000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr13:110829600-110874400	Weak transcription	A549	lung
48	chr13:110829800-110869600	Weak transcription	Small Intestine	intestine
49	chr13:110830000-110840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr13:110830000-110870800	Weak transcription	Rectal Mucosa Donor 29	rectum

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