Variant report

Variant	rs3783746
Chromosome Location	chr14:63859680-63859681
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:63857974..63860690-chr14:63917148..63919988,2	MCF-7	breast:
2	chr14:63855657..63857190-chr14:63857945..63860225,2	K562	blood:
3	chr14:63858881..63861162-chr14:64008688..64011612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154001	Chromatin interaction
ENSG00000261242	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17101134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17225133	0.80[AMR][1000 genomes]
rs17824943	1.00[AMR][1000 genomes]
rs17824991	0.80[AMR][1000 genomes]
rs1951211	0.84[AMR][1000 genomes]
rs2356514	0.87[AMR][1000 genomes]
rs3742626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3813412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4551962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7141733	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73270497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73272512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73272530	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73272531	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv431011	chr14:63743247-63866686	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051684	chr14:63752916-63867677	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2751279	chr14:63754363-63871416	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2751281	chr14:63758432-63866686	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1041108	chr14:63765661-63864885	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2761522	chr14:63765673-63867689	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1054848	chr14:63775037-63864885	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1044094	chr14:63775037-63865925	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv1039158	chr14:63775037-63866686	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv1036375	chr14:63775037-63867296	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv1050897	chr14:63775037-63867677	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv1049638	chr14:63776289-63867296	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv902018	chr14:63786658-63884984	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63829400-63861200	Weak transcription	Brain Angular Gyrus	brain
2	chr14:63830800-63867000	Weak transcription	Fetal Heart	heart
3	chr14:63835000-63863800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:63837800-63902200	Weak transcription	Small Intestine	intestine
5	chr14:63839400-63862200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:63840000-63864000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:63841800-63871800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:63843200-63898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:63844400-63861800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:63844800-63862000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr14:63846000-63862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:63846200-63862600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:63846200-63862600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:63846400-63860200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:63846400-63862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:63846400-63863600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:63846400-63867400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:63846600-63862000	Strong transcription	Fetal Intestine Large	intestine
19	chr14:63846800-63861800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:63847000-63860200	Strong transcription	Dnd41	blood
21	chr14:63847000-63862000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:63847200-63862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr14:63847400-63860600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:63847400-63862000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:63847600-63860400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr14:63849000-63868400	Weak transcription	Psoas Muscle	Psoas
27	chr14:63849000-63888000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:63849200-63863600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:63850600-63862000	Strong transcription	Left Ventricle	heart
30	chr14:63851000-63863200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr14:63851000-63863800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:63851000-63871600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:63851200-63886000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:63851200-63902400	Weak transcription	Right Ventricle	heart
35	chr14:63851200-63903600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr14:63851400-63860000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:63851600-63866800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr14:63851800-63860600	Strong transcription	Thymus	Thymus
40	chr14:63851800-63863400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr14:63851800-63869000	Strong transcription	Primary B cells from cord blood	blood
42	chr14:63852400-63882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:63852600-63877000	Weak transcription	Spleen	Spleen
44	chr14:63852600-63899000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:63853200-63862600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr14:63853200-63886600	Weak transcription	NH-A	brain
47	chr14:63853800-63862000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:63853800-63867600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:63854000-63893400	Weak transcription	Fetal Brain Male	brain
50	chr14:63854600-63872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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