Variant report

Variant	rs3784137
Chromosome Location	chr14:69388765-69388766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr14:69388277-69388922	MCF-7	breast:	n/a	n/a
2	TCF12	chr14:69388725-69389409	SK-N-SH	brain:	n/a	chr14:69388850-69388858
3	TCF12	chr14:69388729-69389487	SK-N-SH	brain:	n/a	chr14:69388850-69388858

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69385888..69393669-chr14:69442988..69447287,14	MCF-7	breast:
2	chr14:69385676..69391979-chr14:69443116..69446617,6	MCF-7	breast:

Variant related genes	Relation type
ACTN1	TF binding region
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1009145	0.88[CEU][hapmap];0.84[CHB][hapmap];0.84[MEX][hapmap]
rs10141794	0.84[CHB][hapmap]
rs12588423	0.84[CHB][hapmap]
rs2268980	0.83[CHB][hapmap]
rs2268982	0.84[CHB][hapmap]
rs2268983	0.84[CHB][hapmap]
rs2268985	0.88[CEU][hapmap];0.84[CHB][hapmap];0.80[MEX][hapmap]
rs2268986	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs2300878	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs3742897	0.84[CHB][hapmap]
rs4902672	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs7141959	0.83[JPT][hapmap]
rs7145573	0.91[ASN][1000 genomes]
rs729725	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
4	chr14:69348200-69389200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:69354000-69393200	Strong transcription	NHEK	skin
6	chr14:69354600-69393000	Strong transcription	Dnd41	blood
7	chr14:69360600-69388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:69362600-69389200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:69369000-69391200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:69376000-69389400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:69376000-69395400	Weak transcription	Brain Angular Gyrus	brain
14	chr14:69376600-69392400	Weak transcription	Brain Germinal Matrix	brain
15	chr14:69378200-69389200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:69378800-69394000	Weak transcription	Stomach Mucosa	stomach
17	chr14:69378800-69402400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:69380200-69389200	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:69380200-69389400	Strong transcription	Liver	Liver
20	chr14:69380200-69392600	Strong transcription	HUVEC	blood vessel
21	chr14:69380600-69389800	Strong transcription	Lung	lung
22	chr14:69380800-69388800	Weak transcription	Right Atrium	heart
23	chr14:69380800-69389800	Strong transcription	Osteobl	bone
24	chr14:69381600-69388800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:69382000-69388800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:69382000-69391000	Strong transcription	NHDF-Ad	bronchial
27	chr14:69382000-69394200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:69383400-69388800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr14:69383400-69389200	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:69383600-69391000	Weak transcription	Thymus	Thymus
31	chr14:69384400-69388800	Genic enhancers	Stomach Smooth Muscle	stomach
32	chr14:69384800-69389400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:69385200-69393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr14:69385400-69391400	Strong transcription	Hela-S3	cervix
35	chr14:69385600-69391400	Enhancers	Fetal Thymus	thymus
36	chr14:69385600-69391600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:69385600-69402800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr14:69386000-69392400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr14:69386200-69388800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:69386200-69390000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:69386600-69389000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:69386600-69389200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:69387000-69395000	Weak transcription	Fetal Kidney	kidney
44	chr14:69387000-69402600	Weak transcription	K562	blood
45	chr14:69387400-69391800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:69387400-69420400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:69387600-69389400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
48	chr14:69387600-69390000	Genic enhancers	Right Ventricle	heart
49	chr14:69387600-69392000	Enhancers	Fetal Heart	heart
50	chr14:69387600-69392000	Genic enhancers	Fetal Stomach	stomach

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