Variant report

Variant	rs3784324
Chromosome Location	chr15:78398535-78398536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78298725..78300979-chr15:78395838..78398547,2	K562	blood:
2	chr15:78394209..78398078-chr15:78398123..78400882,3	MCF-7	breast:
3	chr15:78392111..78393882-chr15:78397751..78399759,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28470811	1.00[ASN][1000 genomes]
rs3784329	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4611417	1.00[JPT][hapmap]
rs74029754	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv274890	chr15:78396447-78402258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78385200-78400600	Weak transcription	Pancreas	Pancrea
2	chr15:78392000-78400600	Strong transcription	Thymus	Thymus
3	chr15:78393200-78406000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:78393400-78401200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:78393800-78399200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:78394200-78399200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:78394600-78398600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr15:78394600-78398800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:78394800-78398600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:78394800-78398600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:78394800-78398800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:78394800-78398800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:78394800-78398800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:78394800-78399000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:78395000-78398600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:78395000-78398800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr15:78395000-78405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:78395200-78398600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:78395200-78398600	Genic enhancers	Fetal Thymus	thymus
20	chr15:78395200-78399000	Enhancers	Duodenum Mucosa	Duodenum
21	chr15:78395400-78398600	Enhancers	Spleen	Spleen
22	chr15:78395400-78405600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:78395600-78398800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:78395600-78399200	Genic enhancers	Fetal Intestine Small	intestine
25	chr15:78395800-78398600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:78395800-78400200	Strong transcription	Fetal Brain Female	brain
27	chr15:78396000-78400000	Strong transcription	Brain Germinal Matrix	brain
28	chr15:78396000-78405400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:78396200-78398600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:78396200-78399000	Enhancers	GM12878-XiMat	blood
31	chr15:78396200-78399200	Enhancers	Placenta	Placenta
32	chr15:78396200-78400600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:78396200-78400600	Weak transcription	Right Atrium	heart
34	chr15:78396200-78405600	Weak transcription	Brain Anterior Caudate	brain
35	chr15:78396200-78421800	Weak transcription	Right Ventricle	heart
36	chr15:78396400-78398600	Enhancers	Primary T cells from cord blood	blood
37	chr15:78396400-78404000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:78396400-78405400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:78396600-78398600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:78396600-78405400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:78396600-78405600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:78396600-78423800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:78396800-78399000	Genic enhancers	Fetal Intestine Large	intestine
44	chr15:78396800-78401400	Strong transcription	Fetal Stomach	stomach
45	chr15:78397000-78400600	Weak transcription	Fetal Lung	lung
46	chr15:78397000-78405600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:78397200-78400600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr15:78397400-78398600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:78397600-78400600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:78397600-78401200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links