Variant report

Variant	rs3785137
Chromosome Location	chr16:48590627-48590628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr16:48590607-48591286	HCT-116	colon:	n/a	n/a
2	JUND	chr16:48590614-48591249	HCT-116	colon:	n/a	n/a
3	RUNX3	chr16:48590620-48591171	GM12878	blood:	n/a	n/a
4	FOSL2	chr16:48590615-48591228	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
N4BP1	TF binding region
ENSG00000261267	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16946181	1.00[JPT][hapmap]
rs8047729	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48572400-48592400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:48576200-48593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:48577200-48596800	Weak transcription	Colonic Mucosa	Colon
4	chr16:48578200-48592200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:48578400-48593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:48578400-48601800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:48580800-48594600	Weak transcription	Fetal Kidney	kidney
8	chr16:48583800-48617800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr16:48584600-48591200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr16:48585400-48594600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:48586200-48597400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr16:48586400-48593800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr16:48586400-48594400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:48587000-48592200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr16:48587000-48592400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr16:48587200-48592200	Enhancers	Brain Cingulate Gyrus	brain
17	chr16:48587400-48591200	Enhancers	Brain Substantia Nigra	brain
18	chr16:48587400-48594400	Weak transcription	Fetal Thymus	thymus
19	chr16:48587400-48594800	Enhancers	Fetal Heart	heart
20	chr16:48587600-48591000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr16:48587800-48591000	Enhancers	Stomach Smooth Muscle	stomach
22	chr16:48587800-48591000	Weak transcription	Hela-S3	cervix
23	chr16:48587800-48592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr16:48588200-48591200	Enhancers	Brain Angular Gyrus	brain
25	chr16:48588200-48591200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr16:48588400-48591000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr16:48588400-48591800	Enhancers	Small Intestine	intestine
28	chr16:48588400-48592200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr16:48588400-48592800	Enhancers	Right Ventricle	heart
30	chr16:48588400-48594800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr16:48588600-48591000	Enhancers	Psoas Muscle	Psoas
32	chr16:48588600-48591400	Enhancers	Adipose Nuclei	Adipose
33	chr16:48588600-48591400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr16:48588600-48591600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:48588600-48592000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr16:48588600-48593800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr16:48588600-48594200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr16:48588800-48590800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr16:48588800-48591000	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr16:48588800-48591400	Enhancers	Colon Smooth Muscle	Colon
41	chr16:48588800-48592400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr16:48588800-48592800	Enhancers	Fetal Brain Male	brain
43	chr16:48588800-48593000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr16:48588800-48596000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr16:48588800-48597200	Enhancers	Liver	Liver
46	chr16:48589000-48591600	Enhancers	Brain Hippocampus Middle	brain
47	chr16:48589000-48592000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr16:48589000-48592200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:48589000-48595800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:48589200-48591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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