Variant report

Variant	rs3785425
Chromosome Location	chr16:70728477-70728478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr16:70728229-70730235	SK-N-SH	brain:	n/a	chr16:70728961-70728970
2	FOSL2	chr16:70727826-70728529	A549	lung:	n/a	chr16:70728174-70728182
3	MAX	chr16:70727391-70730156	A549	lung:	n/a	chr16:70728961-70728968 chr16:70728959-70728970 chr16:70728960-70728969 chr16:70728173-70728182 chr16:70727717-70727727 chr16:70728960-70728969 chr16:70728958-70728971 chr16:70728959-70728970 chr16:70728960-70728970
4	SP1	chr16:70727746-70728526	A549	lung:	n/a	chr16:70728053-70728062
5	PBX3	chr16:70727960-70728508	SK-N-SH	brain:	n/a	n/a
6	SIN3AK20	chr16:70727771-70728583	MCF-7	breast:	n/a	n/a
7	MAX	chr16:70727458-70730075	A549	lung:	n/a	chr16:70728961-70728968 chr16:70728959-70728970 chr16:70728960-70728969 chr16:70728173-70728182 chr16:70727717-70727727 chr16:70728960-70728969 chr16:70728958-70728971 chr16:70728959-70728970 chr16:70728960-70728970
8	TCF12	chr16:70727750-70728889	SK-N-SH	brain:	n/a	chr16:70728652-70728659 chr16:70728286-70728293
9	NR3C1	chr16:70727724-70728595	A549	lung:	n/a	chr16:70728414-70728440 chr16:70728414-70728440
10	TEAD4	chr16:70727761-70728579	A549	lung:	n/a	n/a
11	GATA3	chr16:70728048-70728537	MCF-7	breast:	n/a	n/a
12	TEAD4	chr16:70727794-70728510	SK-N-SH	brain:	n/a	n/a
13	SP1	chr16:70727747-70728563	A549	lung:	n/a	chr16:70728053-70728062
14	MAZ	chr16:70726851-70728581	IMR90	lung:	n/a	chr16:70728173-70728182
15	EP300	chr16:70727771-70728581	A549	lung:	n/a	n/a
16	TCF12	chr16:70727774-70728495	ECC-1	luminal epithelium:	n/a	chr16:70728286-70728293
17	CREB1	chr16:70727895-70728685	A549	lung:	n/a	n/a
18	NR2F2	chr16:70727764-70728549	MCF-7	breast:	n/a	n/a
19	TCF12	chr16:70727799-70728575	SK-N-SH	brain:	n/a	chr16:70728286-70728293
20	TCF12	chr16:70727529-70729072	A549	lung:	n/a	chr16:70728652-70728659 chr16:70728286-70728293 chr16:70727579-70727589
21	NR2F2	chr16:70727758-70728720	MCF-7	breast:	n/a	n/a
22	TEAD4	chr16:70727764-70728481	SK-N-SH	brain:	n/a	n/a
23	MAX	chr16:70727771-70728491	SK-N-SH	brain:	n/a	chr16:70728173-70728182
24	TCF12	chr16:70727863-70728589	MCF-7	breast:	n/a	chr16:70728286-70728293
25	GATA3	chr16:70727845-70728483	MCF-7	breast:	n/a	n/a
26	GATA3	chr16:70727765-70728624	MCF-7	breast:	n/a	n/a
27	GATA3	chr16:70727765-70729099	A549	lung:	n/a	n/a
28	SIN3AK20	chr16:70727673-70728601	MCF-7	breast:	n/a	n/a
29	TFAP2C	chr16:70727801-70728494	Hela-S3	cervix:	n/a	chr16:70728258-70728273
30	TEAD4	chr16:70727837-70728480	A549	lung:	n/a	n/a
31	EP300	chr16:70727934-70728494	MCF-7	breast:	n/a	n/a
32	NFIC	chr16:70727731-70729220	SK-N-SH	brain:	n/a	n/a
33	EP300	chr16:70727796-70728561	A549	lung:	n/a	n/a
34	RXRA	chr16:70727797-70728585	SK-N-SH	brain:	n/a	n/a
35	TCF12	chr16:70727986-70728515	H1-hESC	embryonic stem cell:	n/a	chr16:70728286-70728293
36	BCL3	chr16:70727687-70728702	A549	lung:	n/a	n/a
37	TFAP2A	chr16:70727797-70728510	Hela-S3	cervix:	n/a	chr16:70728173-70728182

No.	Distal block	Cell Line	Cell type
1	chr16:70694604..70697183-chr16:70727406..70729893,2	K562	blood:
2	chr16:70710502..70716221-chr16:70726302..70731102,7	K562	blood:
3	chr16:70728125..70734937-chr16:70778355..70783574,11	MCF-7	breast:
4	chr16:70726776..70729774-chr16:70778926..70781727,2	K562	blood:
5	chr16:70555851..70557474-chr16:70727939..70730719,2	MCF-7	breast:
6	chr16:70557802..70559378-chr16:70727499..70729855,2	MCF-7	breast:

Variant related genes	Relation type
VAC14	TF binding region
ENSG00000260156	Chromatin interaction
ENSG00000268927	Chromatin interaction
ENSG00000103043	Chromatin interaction
ENSG00000132613	Chromatin interaction
ENSG00000189091	Chromatin interaction
ENSG00000103051	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10153136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16970437	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17307409	0.88[CHB][hapmap]
rs3743988	0.89[CHB][hapmap]
rs4985561	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59812853	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59984573	0.87[ASN][1000 genomes]
rs7185187	0.89[CHB][hapmap]
rs936302	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9673512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv906874	chr16:70677785-70740707	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv906875	chr16:70677785-70742536	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv906876	chr16:70677785-70757555	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv906877	chr16:70677785-70766378	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv906878	chr16:70677785-70782922	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv906879	chr16:70677785-70790831	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv906880	chr16:70677785-70796515	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv572946	chr16:70694000-70740707	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv471094	chr16:70694000-70749970	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv906885	chr16:70696367-70742536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv1059226	chr16:70708698-70779144	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
15	nsv572947	chr16:70714434-70731870	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
16	nsv906888	chr16:70716742-70742536	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
17	nsv906889	chr16:70724001-70790831	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv572948	chr16:70724432-70731870	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70719400-70729200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:70719400-70729400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr16:70719800-70732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:70720000-70732200	Enhancers	Fetal Brain Male	brain
5	chr16:70720400-70729200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr16:70720400-70729600	Enhancers	Right Atrium	heart
7	chr16:70720400-70732400	Enhancers	Right Ventricle	heart
8	chr16:70720400-70733400	Enhancers	Left Ventricle	heart
9	chr16:70720400-70753200	Weak transcription	Primary B cells from cord blood	blood
10	chr16:70720600-70728600	Enhancers	Placenta	Placenta
11	chr16:70720600-70728800	Weak transcription	Primary T cells from cord blood	blood
12	chr16:70720600-70729000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr16:70720600-70729200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr16:70720600-70729600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr16:70720600-70729600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr16:70720600-70729800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr16:70720600-70730000	Enhancers	Psoas Muscle	Psoas
18	chr16:70720600-70731800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr16:70720800-70729800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr16:70720800-70730200	Enhancers	Adipose Nuclei	Adipose
21	chr16:70720800-70731800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr16:70720800-70732400	Genic enhancers	Fetal Stomach	stomach
23	chr16:70721000-70728800	Enhancers	Fetal Muscle Trunk	muscle
24	chr16:70721000-70732400	Genic enhancers	Fetal Intestine Small	intestine
25	chr16:70721200-70730000	Enhancers	Brain Anterior Caudate	brain
26	chr16:70721200-70730200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr16:70721200-70730200	Enhancers	NHDF-Ad	bronchial
28	chr16:70722000-70728600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr16:70722400-70729800	Genic enhancers	Spleen	Spleen
30	chr16:70722800-70728600	Enhancers	Brain Angular Gyrus	brain
31	chr16:70722800-70729400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:70722800-70730000	Enhancers	Brain Cingulate Gyrus	brain
33	chr16:70722800-70730000	Enhancers	Rectal Smooth Muscle	rectum
34	chr16:70722800-70730800	Weak transcription	Pancreas	Pancrea
35	chr16:70723000-70730200	Enhancers	Brain Hippocampus Middle	brain
36	chr16:70723600-70729600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:70723600-70730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:70723800-70732200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:70724200-70732800	Enhancers	Placenta Amnion	Placenta Amnion
40	chr16:70724400-70728800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:70724400-70729000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr16:70724600-70729600	Genic enhancers	Fetal Intestine Large	intestine
43	chr16:70724600-70732000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr16:70724800-70729600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:70725000-70728600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr16:70725000-70729000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr16:70725000-70729200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr16:70725200-70729400	Weak transcription	Small Intestine	intestine
49	chr16:70725200-70729400	Enhancers	Osteobl	bone
50	chr16:70725200-70729800	Enhancers	NH-A	brain

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