Variant report

Variant	rs3785652
Chromosome Location	chr17:15152516-15152517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15142573..15145462-chr17:15150924..15153034,2	K562	blood:
2	chr17:15141620..15144073-chr17:15150924..15153203,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10521299	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3785648	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3785651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56857955	0.96[ASN][1000 genomes]
rs7415	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15132200-15158800	Weak transcription	Hela-S3	cervix
2	chr17:15135800-15160200	Weak transcription	Pancreas	Pancrea
3	chr17:15137200-15158000	Weak transcription	Stomach Mucosa	stomach
4	chr17:15139000-15152800	Weak transcription	Colonic Mucosa	Colon
5	chr17:15139800-15160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:15142600-15154000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:15142600-15159000	Weak transcription	Fetal Kidney	kidney
8	chr17:15142600-15159000	Weak transcription	NH-A	brain
9	chr17:15142800-15159200	Weak transcription	Fetal Brain Male	brain
10	chr17:15143000-15154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr17:15143000-15156800	Weak transcription	Gastric	stomach
12	chr17:15144200-15152600	Weak transcription	Lung	lung
13	chr17:15146800-15160400	Strong transcription	A549	lung
14	chr17:15147400-15153400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:15148000-15153200	Genic enhancers	Fetal Muscle Leg	muscle
16	chr17:15148000-15159000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr17:15148200-15159000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr17:15148200-15160400	Strong transcription	Fetal Stomach	stomach
19	chr17:15148400-15158000	Genic enhancers	Left Ventricle	heart
20	chr17:15148800-15153400	Weak transcription	Aorta	Aorta
21	chr17:15148800-15154200	Weak transcription	Spleen	Spleen
22	chr17:15149800-15155400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr17:15149800-15160200	Genic enhancers	Brain Hippocampus Middle	brain
24	chr17:15150600-15156000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:15150800-15152600	Genic enhancers	Stomach Smooth Muscle	stomach
26	chr17:15150800-15152800	Genic enhancers	Right Ventricle	heart
27	chr17:15150800-15153200	Enhancers	Right Atrium	heart
28	chr17:15150800-15153400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:15150800-15153600	Enhancers	Brain Substantia Nigra	brain
30	chr17:15150800-15154600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr17:15150800-15154800	Genic enhancers	Rectal Smooth Muscle	rectum
32	chr17:15150800-15157400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
33	chr17:15150800-15159400	Genic enhancers	Brain Cingulate Gyrus	brain
34	chr17:15150800-15160200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:15150800-15160200	Genic enhancers	Adipose Nuclei	Adipose
36	chr17:15151000-15152800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr17:15151000-15154400	Strong transcription	Fetal Lung	lung
38	chr17:15151000-15160000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr17:15151200-15153200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:15151200-15154200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr17:15151200-15154600	Enhancers	Brain Angular Gyrus	brain
42	chr17:15151200-15159200	Genic enhancers	Brain Anterior Caudate	brain
43	chr17:15151400-15152800	Genic enhancers	Placenta	Placenta
44	chr17:15151400-15153200	Genic enhancers	Brain Inferior Temporal Lobe	brain
45	chr17:15151400-15154000	Weak transcription	HSMMtube	muscle
46	chr17:15151400-15158000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr17:15151400-15160000	Strong transcription	HUVEC	blood vessel
48	chr17:15151400-15160000	Weak transcription	K562	blood
49	chr17:15151400-15160200	Strong transcription	HSMM	muscle
50	chr17:15151400-15160200	Genic enhancers	NHDF-Ad	bronchial

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