Variant report

Variant	rs3785763
Chromosome Location	chr17:34001896-34001897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33996336..33998248-chr17:34000233..34002749,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1037591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10491114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11870399	0.97[ASN][1000 genomes]
rs11870475	0.89[ASN][1000 genomes]
rs12449919	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12450039	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12452633	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12452961	0.97[ASN][1000 genomes]
rs12600662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12603142	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971122	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs1964509	0.89[ASN][1000 genomes]
rs2079924	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs226424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs226427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs226433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs226437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2301731	0.97[ASN][1000 genomes]
rs2428463	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2523115	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28384428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs28384429	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28661650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3760325	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3785759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs62079728	0.97[ASN][1000 genomes]
rs7211363	0.89[ASN][1000 genomes]
rs9303689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9891317	0.97[ASN][1000 genomes]
rs9904644	0.82[JPT][hapmap]
rs9904957	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9906037	0.97[ASN][1000 genomes]
rs9914730	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33921000-34024400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33948800-34010600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr17:33954600-34006000	Weak transcription	Stomach Mucosa	stomach
5	chr17:33960000-34024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr17:33966000-34002000	Strong transcription	Primary T cells from cord blood	blood
7	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:33975000-34025800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr17:33977200-34010400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr17:33979400-34016600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr17:33982000-34007400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:33988600-34002400	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr17:33992800-34028200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr17:33993800-34003200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:33994600-34002600	Strong transcription	NH-A	brain
16	chr17:33994600-34004400	Strong transcription	A549	lung
17	chr17:33994800-34002200	Strong transcription	HUVEC	blood vessel
18	chr17:33994800-34003200	Strong transcription	Fetal Muscle Trunk	muscle
19	chr17:33994800-34010600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:33995000-34007000	Weak transcription	Fetal Intestine Small	intestine
21	chr17:33995400-34004200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:33995600-34003000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr17:33995600-34003800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:33995800-34002600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr17:33995800-34002800	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr17:33995800-34004000	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr17:33995800-34024600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:33996000-34010800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr17:33996400-34002600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr17:33996400-34003600	Strong transcription	Dnd41	blood
31	chr17:33996400-34004000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr17:33996400-34005800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:33996600-34002800	Strong transcription	K562	blood
34	chr17:33996800-34002000	Strong transcription	Fetal Thymus	thymus
35	chr17:33996800-34002400	Strong transcription	NHDF-Ad	bronchial
36	chr17:33996800-34003800	Strong transcription	Primary B cells from cord blood	blood
37	chr17:33997000-34002200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr17:33997000-34010400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr17:33997200-34002000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr17:33997200-34002200	Strong transcription	Osteobl	bone
41	chr17:33997200-34002400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:33997400-34002000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr17:33997400-34002200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr17:33997400-34002400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr17:33997400-34002600	Strong transcription	Fetal Lung	lung
46	chr17:33997400-34023200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr17:33997600-34002000	Strong transcription	HSMMtube	muscle
48	chr17:33997600-34002200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:33997600-34002200	Strong transcription	Brain Anterior Caudate	brain
50	chr17:33997600-34003200	Strong transcription	Placenta	Placenta

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