Variant report

Variant	rs3787903
Chromosome Location	chr21:39850639-39850640
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39844325..39848351-chr21:39848491..39850801,3	MCF-7	breast:
2	chr21:39848201..39851847-chr21:39852141..39856874,4	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1041795	0.94[CHD][hapmap];0.81[ASN][1000 genomes]
rs12481801	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13051739	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17285245	0.85[MEX][hapmap]
rs17285252	0.85[MEX][hapmap]
rs2212933	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2836424	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2836435	0.83[ASN][1000 genomes]
rs3787906	0.85[MEX][hapmap]
rs3787909	0.85[MEX][hapmap]
rs7282099	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9977083	0.81[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9978004	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs9984495	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1064436	chr21:39846571-39875576	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39843400-39855200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr21:39843400-39858200	Weak transcription	Esophagus	oesophagus
3	chr21:39846400-39855600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:39846400-39855800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39846800-39851400	Enhancers	Thymus	Thymus
6	chr21:39847000-39850800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:39847200-39850800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:39847400-39852400	Enhancers	Left Ventricle	heart
9	chr21:39847600-39851000	Enhancers	Fetal Heart	heart
10	chr21:39848400-39858600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr21:39848600-39851000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr21:39848800-39851000	Enhancers	Adipose Nuclei	Adipose
13	chr21:39849000-39852200	Enhancers	Fetal Thymus	thymus
14	chr21:39849200-39851000	Weak transcription	Right Ventricle	heart
15	chr21:39849200-39852800	Enhancers	HMEC	breast
16	chr21:39849400-39851200	Enhancers	NH-A	brain
17	chr21:39849400-39851400	Enhancers	Osteobl	bone
18	chr21:39849600-39851200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr21:39849600-39852000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr21:39849600-39852800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr21:39849600-39858600	Enhancers	Primary hematopoietic stem cells	blood
22	chr21:39849800-39851000	Enhancers	NHEK	skin
23	chr21:39850000-39851400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr21:39850000-39852200	Genic enhancers	HUVEC	blood vessel
25	chr21:39850000-39852400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr21:39850000-39852600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr21:39850200-39851800	Enhancers	Primary T cells from cord blood	blood
28	chr21:39850200-39851800	Enhancers	Lung	lung
29	chr21:39850200-39852000	Weak transcription	Aorta	Aorta
30	chr21:39850400-39858200	Weak transcription	Right Atrium	heart
31	chr21:39850600-39851400	Weak transcription	Spleen	Spleen
32	chr21:39850600-39854800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

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