Variant report

Variant	rs3788183
Chromosome Location	chr21:46629464-46629465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:46628488..46630403-chr21:46630969..46633237,2	K562	blood:
2	chr21:46622478..46626283-chr21:46626862..46631203,5	MCF-7	breast:
3	chr21:46629095..46632023-chr21:46643087..46645467,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11088983	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11700834	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13051236	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1537121	0.83[EUR][1000 genomes]
rs1537122	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1537123	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2071873	0.88[AFR][1000 genomes]
rs2225434	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2246081	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2838799	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2838800	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2838806	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2838813	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2838815	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2849618	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs367986	0.92[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs372766	0.82[EUR][1000 genomes]
rs373037	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs374778	0.81[EUR][1000 genomes]
rs377902	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs381466	0.81[EUR][1000 genomes]
rs384876	0.81[EUR][1000 genomes]
rs386762	0.81[EUR][1000 genomes]
rs394608	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs394872	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs395761	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs397092	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs399185	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs407133	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs412646	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs414715	0.81[EUR][1000 genomes]
rs421716	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs422720	0.81[EUR][1000 genomes]
rs422870	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs427943	0.96[CHB][hapmap];0.91[JPT][hapmap]
rs434492	0.81[EUR][1000 genomes]
rs446158	0.83[EUR][1000 genomes]
rs4818766	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4819034	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8134836	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs914206	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs983157	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs984791	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9980766	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531546	chr21:46504151-47411772	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv1059771	chr21:46561482-46830602	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv544481	chr21:46561482-46830602	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1063943	chr21:46571988-46819424	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv544482	chr21:46571988-46819424	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1064859	chr21:46571988-46830602	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
7	nsv544483	chr21:46571988-46830602	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
8	nsv1061691	chr21:46572641-46831862	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	nsv544484	chr21:46572641-46831862	Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
10	nsv587839	chr21:46580370-46837709	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
11	nsv587840	chr21:46580370-46839904	Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
12	nsv916959	chr21:46585681-46831845	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
13	nsv1063721	chr21:46610599-46907894	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv1059779	chr21:46611859-46891352	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
15	nsv544485	chr21:46611859-46891352	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
16	nsv1059805	chr21:46618210-46736943	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv587841	chr21:46619840-46647078	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46589000-46646000	Weak transcription	Colonic Mucosa	Colon
2	chr21:46606000-46630600	Weak transcription	Pancreas	Pancrea
3	chr21:46606800-46640800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr21:46609000-46630600	Weak transcription	Fetal Thymus	thymus
5	chr21:46609000-46630800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr21:46609600-46634600	Weak transcription	Fetal Heart	heart
7	chr21:46610000-46634800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr21:46610000-46644800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr21:46610200-46634400	Weak transcription	Psoas Muscle	Psoas
10	chr21:46610400-46641000	Weak transcription	Brain Germinal Matrix	brain
11	chr21:46610400-46641800	Weak transcription	HepG2	liver
12	chr21:46610800-46640200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr21:46610800-46641000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr21:46610800-46641200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr21:46610800-46647800	Weak transcription	Brain Angular Gyrus	brain
16	chr21:46611000-46639600	Weak transcription	Fetal Brain Male	brain
17	chr21:46611000-46639600	Weak transcription	Gastric	stomach
18	chr21:46611000-46644600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr21:46611000-46645000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr21:46611200-46630800	Weak transcription	Fetal Intestine Large	intestine
21	chr21:46617600-46632600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr21:46619000-46633000	Strong transcription	Stomach Smooth Muscle	stomach
23	chr21:46620800-46633600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr21:46621200-46633400	Strong transcription	HSMMtube	muscle
25	chr21:46621800-46640400	Weak transcription	Fetal Brain Female	brain
26	chr21:46622000-46640600	Weak transcription	Brain Substantia Nigra	brain
27	chr21:46622200-46632600	Strong transcription	Adipose Nuclei	Adipose
28	chr21:46622400-46635400	Strong transcription	Primary T cells from cord blood	blood
29	chr21:46622600-46632400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr21:46622800-46640600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr21:46623000-46632400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr21:46623000-46633400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr21:46623200-46629800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr21:46623200-46633800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr21:46623400-46632800	Strong transcription	Hela-S3	cervix
36	chr21:46623600-46634600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr21:46624600-46630600	Weak transcription	Ovary	ovary
38	chr21:46624600-46638600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr21:46624800-46629800	Weak transcription	Thymus	Thymus
40	chr21:46625000-46632200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr21:46625000-46645000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr21:46625200-46640200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr21:46625400-46629800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr21:46625400-46630400	Weak transcription	Brain Hippocampus Middle	brain
45	chr21:46625600-46629600	Weak transcription	Liver	Liver
46	chr21:46625600-46630400	Weak transcription	Fetal Intestine Small	intestine
47	chr21:46625600-46631600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr21:46625600-46639600	Weak transcription	Placenta	Placenta
49	chr21:46625600-46640800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr21:46625800-46630000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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