Variant report

No.	Distal block	Cell Line	Cell type
1	chr22:31367419..31370310-chr22:31536791..31539101,2	MCF-7	breast:
2	chr22:31534966..31537778-chr22:31554685..31557531,2	MCF-7	breast:
3	chr22:31537492..31539345-chr22:31541481..31543024,2	K562	blood:
4	chr22:31497058..31499268-chr22:31535389..31537818,2	MCF-7	breast:
5	chr22:31491384..31493577-chr22:31536978..31538915,3	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1034587	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs12627941	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs17220369	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2072193	0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2074735	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2239905	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2267169	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs2267171	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2283878	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2283880	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs2413041	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs3761431	0.90[CHB][hapmap];0.81[CHD][hapmap]
rs4561750	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4615	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs5749231	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs5749232	0.87[CHB][hapmap]
rs5749237	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs5749244	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs5749254	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs5753488	0.90[CHB][hapmap]
rs5753518	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs5753551	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs5753559	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs5753560	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs5997940	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs61687461	0.84[ASN][1000 genomes]
rs737809	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs886074	0.95[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31520400-31538800	Weak transcription	Right Atrium	heart
2	chr22:31530400-31538400	Weak transcription	Left Ventricle	heart
3	chr22:31536200-31538000	Enhancers	Stomach Mucosa	stomach
4	chr22:31536200-31540800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr22:31536400-31537800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:31536600-31537600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:31536600-31538800	Weak transcription	Brain Anterior Caudate	brain
8	chr22:31536600-31538800	Weak transcription	Right Ventricle	heart
9	chr22:31536600-31539800	Enhancers	Esophagus	oesophagus
10	chr22:31536600-31540600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:31536800-31537600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr22:31537000-31538800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr22:31537200-31538800	Weak transcription	Brain Hippocampus Middle	brain
14	chr22:31537400-31537600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr22:31537400-31540000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search: