Variant report

Variant	rs37898
Chromosome Location	chr7:122429350-122429351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122427597..122429988-chr7:122525727..122527279,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081803	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2428775	0.90[ASW][hapmap]
rs2428905	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2501456	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs37912	0.81[ASW][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv532218	chr7:122360779-122934247	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1033520	chr7:122366544-122992937	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv949059	chr7:122386967-123066042	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv948531	chr7:122386967-123191974	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv949180	chr7:122386967-123237070	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv524192	chr7:122403421-123218522	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv498124	chr7:122412493-122986259	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122407600-122432000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:122409600-122432200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:122411000-122430200	Weak transcription	Gastric	stomach
4	chr7:122411000-122430200	Weak transcription	Left Ventricle	heart
5	chr7:122417200-122430600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:122422800-122432200	Weak transcription	Liver	Liver
7	chr7:122423400-122430200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:122425400-122430200	Weak transcription	Lung	lung
9	chr7:122425600-122451200	Weak transcription	Stomach Mucosa	stomach
10	chr7:122426000-122430200	Weak transcription	Pancreas	Pancrea
11	chr7:122427400-122430000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:122427600-122429600	Enhancers	Ovary	ovary
13	chr7:122427800-122429600	Weak transcription	Fetal Heart	heart
14	chr7:122427800-122430400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:122427800-122430400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:122428000-122433800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:122428400-122429600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:122428400-122429600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:122428600-122431800	Weak transcription	HepG2	liver
20	chr7:122428800-122429600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:122429000-122429400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr7:122429000-122433000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:122429200-122429400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:122429200-122429600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:122429200-122430200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:122429200-122430800	Enhancers	Fetal Lung	lung
27	chr7:122429200-122431000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:122429200-122432000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:122429200-122434400	Enhancers	HUES48 Cell Line	embryonic stem cell

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