Variant report

Variant	rs3789926
Chromosome Location	chr10:97973808-97973809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97968689..97971328-chr10:97971544..97974282,2	K562	blood:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1007764	0.95[ASN][1000 genomes]
rs10882746	0.95[ASN][1000 genomes]
rs10882747	0.95[ASN][1000 genomes]
rs12784733	0.95[ASN][1000 genomes]
rs2305846	0.95[ASN][1000 genomes]
rs35030481	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917723	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917724	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917726	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917727	0.95[ASN][1000 genomes]
rs6584056	0.95[ASN][1000 genomes]
rs7910295	0.95[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97949600-97989200	Strong transcription	Liver	Liver
4	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
5	chr10:97957600-97988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:97958800-97976400	Strong transcription	Fetal Intestine Large	intestine
7	chr10:97959000-97988800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:97961000-97985600	Weak transcription	Aorta	Aorta
9	chr10:97964000-97985800	Weak transcription	Stomach Mucosa	stomach
10	chr10:97965600-97974200	Weak transcription	Lung	lung
11	chr10:97965800-97998600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:97967000-97976000	Strong transcription	Fetal Intestine Small	intestine
13	chr10:97967200-97977000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:97967400-97981000	Weak transcription	Colonic Mucosa	Colon
15	chr10:97967600-97990600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:97969400-97976400	Strong transcription	Spleen	Spleen
17	chr10:97970600-97974400	Weak transcription	Pancreas	Pancrea
18	chr10:97971000-97977000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97971200-97986400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:97972200-97974200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:97972200-97987600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr10:97972400-97989600	Strong transcription	Primary B cells from cord blood	blood
23	chr10:97972600-97982400	Weak transcription	Thymus	Thymus
24	chr10:97972600-97989200	Strong transcription	GM12878-XiMat	blood
25	chr10:97973000-97974600	Strong transcription	Esophagus	oesophagus
26	chr10:97973000-97977000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97973200-97974800	Strong transcription	Gastric	stomach
28	chr10:97973200-97976800	Strong transcription	Placenta	Placenta
29	chr10:97973400-97989200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:97973600-97975000	Strong transcription	Fetal Stomach	stomach

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