Variant report

Variant rs3790592
Chromosome Location chr1:78558419-78558420
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78535000-78566800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:78545400-78561800 Weak transcription Left Ventricle heart
3 chr1:78545400-78562600 Weak transcription Small Intestine intestine
4 chr1:78546600-78579800 Weak transcription Liver Liver
5 chr1:78546800-78561400 Weak transcription Ovary ovary
6 chr1:78549600-78560200 Weak transcription Fetal Heart heart
7 chr1:78550800-78562600 Weak transcription Aorta Aorta
8 chr1:78553400-78567000 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:78554800-78579800 Weak transcription Duodenum Mucosa Duodenum
10 chr1:78555000-78560400 Weak transcription Osteobl bone
11 chr1:78555000-78563000 Weak transcription HepG2 liver
12 chr1:78555400-78608600 Weak transcription Pancreas Pancrea
13 chr1:78556600-78560800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:78556600-78560800 Weak transcription NHLF lung
15 chr1:78556800-78559400 Enhancers HSMM muscle
16 chr1:78557000-78559200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:78557200-78558600 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr1:78557400-78558600 Strong transcription Fetal Intestine Large intestine
19 chr1:78557400-78561600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:78557600-78558600 Enhancers K562 blood
21 chr1:78557600-78558800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:78557600-78559800 Enhancers Hela-S3 cervix
23 chr1:78557600-78559800 Weak transcription HSMMtube muscle
24 chr1:78557800-78562400 Weak transcription Right Ventricle heart
25 chr1:78557800-78569200 Weak transcription Fetal Intestine Small intestine
26 chr1:78558000-78558600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:78558000-78559600 Enhancers NHEK skin
28 chr1:78558000-78561000 Enhancers Muscle Satellite Cultured Cells --
29 chr1:78558200-78558800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:78558200-78558800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:78558200-78558800 Enhancers NHDF-Ad bronchial
32 chr1:78558200-78559600 Enhancers HMEC breast
33 chr1:78558200-78562400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:78558400-78558600 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr1:78558400-78561200 Enhancers HUVEC blood vessel

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