Variant report

Variant	rs3791663
Chromosome Location	chr2:56128526-56128527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56121055..56123759-chr2:56126713..56128761,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12611917	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2277886	0.86[EUR][1000 genomes]
rs3791664	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4380284	0.85[EUR][1000 genomes]
rs7577612	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56115400-56128800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:56116400-56128600	Weak transcription	Ovary	ovary
3	chr2:56116400-56128800	Weak transcription	Placenta	Placenta
4	chr2:56116400-56128800	Weak transcription	Pancreas	Pancrea
5	chr2:56116400-56144400	Weak transcription	Lung	lung
6	chr2:56116600-56131000	Weak transcription	Adipose Nuclei	Adipose
7	chr2:56119600-56136400	Genic enhancers	HUVEC	blood vessel
8	chr2:56122600-56135000	Weak transcription	Aorta	Aorta
9	chr2:56125800-56129000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:56126000-56129000	Weak transcription	Brain Anterior Caudate	brain
11	chr2:56126400-56130000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:56126800-56129400	Enhancers	NHLF	lung
13	chr2:56126800-56130200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:56127000-56128800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:56127200-56129000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:56127400-56128600	Weak transcription	Fetal Kidney	kidney
17	chr2:56127400-56129200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:56127400-56129800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:56127600-56128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:56127800-56129200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:56128000-56128800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr2:56128000-56129200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:56128000-56129200	Enhancers	Hela-S3	cervix
24	chr2:56128000-56129400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:56128000-56130200	Enhancers	NHEK	skin
26	chr2:56128200-56128600	Weak transcription	NHDF-Ad	bronchial
27	chr2:56128200-56129200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:56128200-56129200	Enhancers	HMEC	breast
29	chr2:56128200-56129200	Genic enhancers	HSMM	muscle
30	chr2:56128200-56129400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:56128200-56129400	Enhancers	K562	blood
32	chr2:56128400-56128600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr2:56128400-56128800	Enhancers	NH-A	brain
34	chr2:56128400-56129000	Enhancers	HSMMtube	muscle
35	chr2:56128400-56129200	Flanking Active TSS	A549	lung
36	chr2:56128400-56130600	Genic enhancers	Osteobl	bone

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