Variant report

Variant	rs3791738
Chromosome Location	chr2:114658253-114658254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114656542..114659348-chr2:114663308..114664810,2	K562	blood:
2	chr2:114646598..114649515-chr2:114657676..114659590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10496455	0.89[AFR][1000 genomes]
rs11123219	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11890157	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11899049	0.94[AFR][1000 genomes]
rs12469450	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12469844	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12478153	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17045275	0.82[AMR][1000 genomes]
rs3791736	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs56021927	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56114409	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59357342	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6734273	0.87[AFR][1000 genomes]
rs6735675	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6743651	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114667600	Weak transcription	Lung	lung
2	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
4	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
6	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
7	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
8	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
10	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
11	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
12	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:114653200-114658400	Enhancers	A549	lung
16	chr2:114653200-114659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:114653400-114659000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:114653800-114658400	Enhancers	Osteobl	bone
23	chr2:114653800-114658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:114653800-114659000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:114654000-114660400	Enhancers	Primary B cells from peripheral blood	blood
26	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr2:114654200-114659200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr2:114654400-114667600	Weak transcription	Thymus	Thymus
29	chr2:114654600-114658400	Weak transcription	Right Atrium	heart
30	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
31	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
32	chr2:114654800-114659000	Genic enhancers	Primary B cells from cord blood	blood
33	chr2:114654800-114659600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:114654800-114663400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:114654800-114666800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr2:114655400-114660200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr2:114655400-114661000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:114655400-114663000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:114655600-114658600	Weak transcription	Left Ventricle	heart
40	chr2:114655600-114661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr2:114655600-114665400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr2:114655600-114665800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr2:114655600-114667600	Weak transcription	HMEC	breast
44	chr2:114655600-114667800	Weak transcription	Fetal Intestine Small	intestine
45	chr2:114655800-114658400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:114655800-114658600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr2:114655800-114658800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:114655800-114659600	Weak transcription	NH-A	brain
49	chr2:114655800-114660200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr2:114655800-114661000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links