Variant report

Variant	rs379174
Chromosome Location	chr8:90862969-90862970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90858881..90863528-chr8:90995317..90998498,11	MCF-7	breast:
2	chr8:90859420..90866965-chr8:90912674..90917180,23	MCF-7	breast:
3	chr8:90860872..90863947-chr8:90993603..90996503,3	K562	blood:
4	chr8:90858582..90866507-chr8:90866541..90873248,10	MCF-7	breast:
5	chr8:90859372..90863594-chr8:90985537..90991967,6	MCF-7	breast:
6	chr8:90860444..90862985-chr8:90893846..90895436,2	MCF-7	breast:
7	chr8:90855265..90859400-chr8:90861352..90863644,3	K562	blood:
8	chr8:90861478..90863438-chr8:90864534..90866909,2	MCF-7	breast:
9	chr8:90859127..90860639-chr8:90860686..90863094,2	MCF-7	breast:
10	chr8:90859033..90864870-chr8:90912637..90916570,15	MCF-7	breast:
11	chr8:90856651..90860319-chr8:90861646..90865925,3	K562	blood:
12	chr8:90855177..90868995-chr8:90994125..91001070,26	MCF-7	breast:
13	chr8:90860628..90863383-chr8:90929314..90932262,2	MCF-7	breast:
14	chr8:90862840..90866421-chr8:90892520..90896963,6	MCF-7	breast:
15	chr8:90862866..90864665-chr8:90970595..90972390,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11782542	0.82[CHB][hapmap]
rs12679902	0.93[YRI][hapmap]
rs13277948	0.90[YRI][hapmap]
rs381326	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39517	0.86[CEU][hapmap];0.96[ASN][1000 genomes]
rs39518	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs398957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs400613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs40383	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs404146	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs410014	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410927	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs428441	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431623	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431985	0.93[CEU][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs454020	0.96[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90861000-90864600	Weak transcription	Aorta	Aorta
2	chr8:90861000-90866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:90861000-90868400	Weak transcription	Ovary	ovary
4	chr8:90861000-90870200	Weak transcription	HMEC	breast
5	chr8:90861000-90871000	Weak transcription	Right Atrium	heart
6	chr8:90861200-90865000	Enhancers	A549	lung
7	chr8:90861200-90869600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:90861200-90869800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:90861400-90869000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:90861600-90868200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:90861600-90868200	Weak transcription	HSMM	muscle
12	chr8:90861800-90869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:90861800-90869200	Weak transcription	Brain Anterior Caudate	brain
14	chr8:90861800-90870200	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:90862400-90863000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr8:90862400-90863200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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