Variant report

Variant	rs3791869
Chromosome Location	chr2:171680080-171680081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171673846..171675372-chr2:171679863..171681966,2	MCF-7	breast:
2	chr2:171678939..171680621-chr2:171682789..171685918,3	MCF-7	breast:
3	chr2:171671327..171674926-chr2:171677821..171681963,4	K562	blood:
4	chr2:171673426..171677773-chr2:171677821..171680534,5	K562	blood:

Variant related genes	Relation type
ENSG00000128683	Chromatin interaction
ENSG00000235934	Chromatin interaction

rs_ID	r²[population]
rs12185692	0.81[EUR][1000 genomes]
rs1420385	0.98[ASN][1000 genomes]
rs3791870	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3791874	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171674400-171682200	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171676800-171680600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:171676800-171680600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
4	chr2:171676800-171681200	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
5	chr2:171677200-171680600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr2:171677400-171680600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr2:171677600-171680600	Bivalent Enhancer	Placenta	Placenta
8	chr2:171677800-171680400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:171677800-171680600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr2:171677800-171680600	Bivalent Enhancer	Liver	Liver
11	chr2:171677800-171680800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:171678000-171680200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:171678000-171680600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:171678000-171680800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:171678200-171680600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:171678200-171680600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:171678400-171680200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:171678600-171680600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:171678800-171680600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:171679000-171680600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr2:171679000-171680600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:171679000-171680800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr2:171679200-171680400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
24	chr2:171679200-171680400	Enhancers	Lung	lung
25	chr2:171679200-171680600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:171679200-171681000	Enhancers	Spleen	Spleen
27	chr2:171679400-171680200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:171679400-171680400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
29	chr2:171679400-171680400	Bivalent/Poised TSS	Colonic Mucosa	Colon
30	chr2:171679400-171680400	Active TSS	Right Atrium	heart
31	chr2:171679400-171680600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
32	chr2:171679400-171680600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr2:171679400-171680600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr2:171679400-171680600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
35	chr2:171679600-171680200	Active TSS	Brain Germinal Matrix	brain
36	chr2:171679600-171680200	Weak transcription	Gastric	stomach
37	chr2:171679600-171680400	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr2:171679600-171680400	Active TSS	Aorta	Aorta
39	chr2:171679600-171680400	Active TSS	Brain Cingulate Gyrus	brain
40	chr2:171679600-171680600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr2:171679600-171680600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
42	chr2:171679600-171680600	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr2:171679600-171680600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr2:171679600-171680600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:171679600-171680600	Active TSS	Brain Anterior Caudate	brain
46	chr2:171679600-171680600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
47	chr2:171679600-171680600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
48	chr2:171679600-171680600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr2:171679600-171680600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
50	chr2:171679600-171681000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links