Variant report

Variant	rs3793857
Chromosome Location	chr10:61857416-61857417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61855989..61858224-chr10:62146602..62149493,2	K562	blood:
2	chr10:61856961..61859524-chr10:61865841..61868206,2	K562	blood:

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10821683	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10994190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10994198	0.89[YRI][hapmap]
rs10994199	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs12253260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12254725	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16914752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16914758	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914759	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393599	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35547480	0.94[EUR][1000 genomes]
rs3793855	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3802696	0.82[JPT][hapmap]
rs9651301	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3793857	UTS2	trans	lymphoblastoid	seeQTL

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
3	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
5	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
11	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
14	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
15	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
18	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
19	chr10:61838800-61864000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:61839800-61859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:61840800-61858200	Weak transcription	Colonic Mucosa	Colon
23	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
24	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:61843000-61868600	Weak transcription	Ovary	ovary
26	chr10:61846600-61864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:61846600-61864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
29	chr10:61847000-61863000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:61847000-61868200	Weak transcription	Primary T cells from cord blood	blood
31	chr10:61847200-61861600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:61847200-61865600	Weak transcription	Aorta	Aorta
33	chr10:61848000-61863200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:61848200-61863200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:61848200-61868000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:61848200-61868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:61848200-61874800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:61849200-61859000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:61849200-61859800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:61849200-61865000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:61849200-61882600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:61849400-61858800	Weak transcription	Fetal Intestine Large	intestine
46	chr10:61850200-61859000	Weak transcription	Stomach Mucosa	stomach
47	chr10:61851800-61869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:61855600-61863200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:61856000-61859800	Strong transcription	Placenta	Placenta
50	chr10:61856200-61858000	Enhancers	K562	blood

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