Variant report

Variant	rs3795616
Chromosome Location	chr1:193155528-193155529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12132305	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv275335	chr1:193155443-193159711	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193131800-193158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:193140400-193159800	Weak transcription	Dnd41	blood
3	chr1:193140800-193161400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:193144200-193160400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:193148400-193161200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:193149600-193156600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:193149800-193156600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr1:193150200-193156400	Active TSS	Brain Angular Gyrus	brain
9	chr1:193150400-193157600	Active TSS	Fetal Brain Female	brain
10	chr1:193150800-193156000	Active TSS	Fetal Brain Male	brain
11	chr1:193150800-193156000	Active TSS	HSMM	muscle
12	chr1:193150800-193157000	Active TSS	HSMMtube	muscle
13	chr1:193151400-193156200	Active TSS	Brain Germinal Matrix	brain
14	chr1:193151600-193155800	Active TSS	Fetal Kidney	kidney
15	chr1:193151600-193156200	Active TSS	Fetal Muscle Leg	muscle
16	chr1:193151600-193156600	Active TSS	NHLF	lung
17	chr1:193151800-193156000	Active TSS	NHDF-Ad	bronchial
18	chr1:193152000-193156000	Active TSS	Brain Anterior Caudate	brain
19	chr1:193152000-193156200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:193152400-193156000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:193152400-193156000	Active TSS	Fetal Intestine Large	intestine
22	chr1:193152600-193156000	Active TSS	Brain Hippocampus Middle	brain
23	chr1:193152600-193156200	Active TSS	Brain Cingulate Gyrus	brain
24	chr1:193152600-193156600	Active TSS	Fetal Stomach	stomach
25	chr1:193153400-193156000	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr1:193153600-193156000	Active TSS	Ovary	ovary
27	chr1:193153600-193156200	Active TSS	Brain Substantia Nigra	brain
28	chr1:193153600-193156400	Active TSS	Right Ventricle	heart
29	chr1:193153600-193158000	Active TSS	Right Atrium	heart
30	chr1:193154000-193155800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr1:193154000-193155800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr1:193154000-193156000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr1:193154200-193155800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr1:193154200-193155800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr1:193154400-193155600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr1:193154400-193155800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:193154400-193156000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr1:193154600-193156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:193154600-193156200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:193154600-193156200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr1:193154600-193156200	Active TSS	Stomach Smooth Muscle	stomach
42	chr1:193154800-193155600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:193154800-193155600	Enhancers	HUVEC	blood vessel
44	chr1:193154800-193155800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr1:193154800-193155800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:193154800-193155800	Active TSS	Fetal Muscle Trunk	muscle
47	chr1:193154800-193156000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr1:193154800-193156000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:193154800-193156400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:193154800-193156800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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