Variant report

Variant	rs3796000
Chromosome Location	chr2:172600310-172600311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172599628..172601946-chr2:172603604..172606469,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12612105	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12619041	0.86[CHB][hapmap]
rs12622385	1.00[EUR][1000 genomes]
rs12622772	0.82[CHB][hapmap]
rs12624292	0.84[EUR][1000 genomes]
rs17581481	1.00[EUR][1000 genomes]
rs17615352	1.00[EUR][1000 genomes]
rs57887937	1.00[EUR][1000 genomes]
rs58368273	1.00[EUR][1000 genomes]
rs58540694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv522519	chr2:172586567-172600310	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172545200-172611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:172546600-172602800	Weak transcription	Small Intestine	intestine
3	chr2:172559600-172605200	Weak transcription	Colonic Mucosa	Colon
4	chr2:172561400-172601800	Weak transcription	Fetal Heart	heart
5	chr2:172564200-172610000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr2:172569000-172618600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:172569800-172611400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:172579800-172611200	Strong transcription	Adipose Nuclei	Adipose
9	chr2:172580200-172611200	Strong transcription	Placenta	Placenta
10	chr2:172580400-172610600	Strong transcription	Fetal Thymus	thymus
11	chr2:172580400-172611400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:172580400-172611400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:172581200-172601800	Weak transcription	Stomach Mucosa	stomach
14	chr2:172581800-172608600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:172581800-172611600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:172584200-172605400	Strong transcription	Fetal Muscle Leg	muscle
17	chr2:172586800-172600600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:172586800-172612000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:172587800-172640800	Weak transcription	Psoas Muscle	Psoas
20	chr2:172588400-172601600	Weak transcription	Dnd41	blood
21	chr2:172588400-172601800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:172588400-172617000	Weak transcription	Spleen	Spleen
23	chr2:172588400-172617400	Weak transcription	Gastric	stomach
24	chr2:172588400-172619800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:172588600-172600600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:172588800-172601600	Weak transcription	Right Ventricle	heart
27	chr2:172588800-172617400	Weak transcription	Pancreas	Pancrea
28	chr2:172589200-172601600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:172589200-172608400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:172589600-172617200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:172590000-172601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:172591000-172611400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:172591800-172606000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:172593000-172602800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr2:172593200-172645000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr2:172593400-172605800	Strong transcription	Fetal Intestine Large	intestine
37	chr2:172594200-172601400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:172594400-172601600	Weak transcription	HSMMtube	muscle
39	chr2:172595400-172602200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr2:172595400-172605400	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:172595400-172619000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr2:172595600-172601600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:172595600-172607400	Weak transcription	Fetal Intestine Small	intestine
44	chr2:172595600-172615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:172596400-172600800	Strong transcription	Primary T cells from cord blood	blood
46	chr2:172596400-172605800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:172596400-172605800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:172596400-172606200	Strong transcription	Liver	Liver
49	chr2:172596400-172610400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:172596400-172611200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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