Variant report

Variant	rs3796193
Chromosome Location	chr3:59927727-59927728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11707269	0.90[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11719244	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1385812	0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[ASN][1000 genomes]
rs3772447	0.89[CHD][hapmap]
rs3772448	0.81[CHB][hapmap]
rs3772454	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55676042	0.80[ASN][1000 genomes]
rs55706007	0.80[ASN][1000 genomes]
rs56286956	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6802153	0.81[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs931322	0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59914800-59928400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:59920800-59928800	Strong transcription	Dnd41	blood
3	chr3:59924600-59928000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:59924600-59928000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:59924600-59928400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:59924600-59928800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:59924800-59928200	Enhancers	Primary T cells from cord blood	blood
8	chr3:59925000-59928000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:59925600-59928200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:59927200-59938400	Weak transcription	Fetal Thymus	thymus
11	chr3:59927600-59940200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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