Variant report

Variant	rs3796239
Chromosome Location	chr3:150644247-150644248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10513380	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1456138	0.92[ASN][1000 genomes]
rs4680058	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3796239	MBNL1	cis	cerebellum	SCAN
rs3796239	EIF2A	cis	parietal	SCAN
rs3796239	TMEM14E	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150632200-150645200	Weak transcription	Right Atrium	heart
2	chr3:150643200-150644400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:150643800-150648400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:150644000-150644400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:150644000-150649400	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:150644200-150644400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:150644200-150644400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:150644200-150644400	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links