Variant report

Variant	rs3796463
Chromosome Location	chr4:96108805-96108806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96103609..96107002-chr4:96107202..96110546,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10026552	0.86[EUR][1000 genomes]
rs13132800	0.93[EUR][1000 genomes]
rs2289043	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs3755880	0.90[CEU][hapmap];0.97[EUR][1000 genomes]
rs3796460	0.97[EUR][1000 genomes]
rs3796461	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs3796462	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796464	0.84[EUR][1000 genomes]
rs767824	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96084600-96111800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:96091000-96111600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:96091400-96109400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
5	chr4:96099400-96109400	Weak transcription	Dnd41	blood
6	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
7	chr4:96102800-96110000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:96103000-96111600	Weak transcription	Fetal Brain Male	brain
9	chr4:96103200-96111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:96103400-96109400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:96103400-96109800	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:96104400-96109400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:96104400-96115000	Weak transcription	Aorta	Aorta
15	chr4:96105600-96111600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:96105600-96111800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:96105800-96111800	Weak transcription	Brain Angular Gyrus	brain
18	chr4:96105800-96123200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:96106600-96111600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:96107800-96110400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:96108000-96109200	Enhancers	Ovary	ovary
22	chr4:96108000-96110000	Enhancers	Brain Substantia Nigra	brain
23	chr4:96108200-96111800	Weak transcription	Fetal Stomach	stomach
24	chr4:96108600-96109400	Enhancers	K562	blood
25	chr4:96108600-96111000	Enhancers	Fetal Thymus	thymus
26	chr4:96108600-96112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:96108600-96112000	Weak transcription	Brain Germinal Matrix	brain
28	chr4:96108600-96113800	Weak transcription	Fetal Lung	lung
29	chr4:96108800-96111800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:96108800-96111800	Weak transcription	Brain Inferior Temporal Lobe	brain

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