Variant report

Variant	rs3797205
Chromosome Location	chr5:95169654-95169655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95167615..95170613-chr5:95172553..95174092,2	MCF-7	breast:
2	chr5:95168597..95170209-chr5:95172089..95173618,2	K562	blood:
3	chr5:95156501..95159437-chr5:95167856..95170336,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173221	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12513728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12523440	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3777209	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv882389	chr5:95144952-95173887	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95159800-95169800	Weak transcription	Fetal Kidney	kidney
2	chr5:95160200-95169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:95160600-95170000	Weak transcription	Right Atrium	heart
4	chr5:95160600-95170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:95160800-95169800	Weak transcription	Fetal Heart	heart
6	chr5:95160800-95169800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:95161600-95171400	Weak transcription	Small Intestine	intestine
8	chr5:95161800-95169800	Weak transcription	Thymus	Thymus
9	chr5:95161800-95170000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:95164200-95171400	Weak transcription	Spleen	Spleen
11	chr5:95164400-95169800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:95164600-95169800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:95164800-95170200	Weak transcription	Colonic Mucosa	Colon
14	chr5:95164800-95170400	Weak transcription	Lung	lung
15	chr5:95167600-95169800	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:95167800-95169800	Weak transcription	Aorta	Aorta
17	chr5:95167800-95170000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:95167800-95170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:95168000-95169800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr5:95168000-95169800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:95168000-95169800	Enhancers	GM12878-XiMat	blood
22	chr5:95168000-95170400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr5:95168200-95169800	Enhancers	Primary hematopoietic stem cells	blood
24	chr5:95168200-95169800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:95168200-95169800	Enhancers	NHEK	skin
26	chr5:95168200-95170000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:95168400-95169800	Enhancers	Primary B cells from cord blood	blood
28	chr5:95168400-95169800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr5:95168400-95170000	Enhancers	Liver	Liver
30	chr5:95168600-95169800	Enhancers	Primary B cells from peripheral blood	blood
31	chr5:95168600-95170000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr5:95168600-95170000	Enhancers	Stomach Mucosa	stomach
33	chr5:95168600-95170200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:95168800-95169800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:95168800-95169800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr5:95168800-95170000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr5:95168800-95170000	Enhancers	HepG2	liver
38	chr5:95168800-95170200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:95168800-95170400	Enhancers	Placenta	Placenta
40	chr5:95169000-95169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr5:95169000-95170000	Enhancers	Fetal Intestine Large	intestine
42	chr5:95169000-95170400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:95169200-95169800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr5:95169200-95169800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:95169200-95169800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:95169200-95170200	Weak transcription	Fetal Thymus	thymus
47	chr5:95169200-95170400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:95169200-95170400	Weak transcription	Gastric	stomach
49	chr5:95169200-95170400	Weak transcription	Pancreas	Pancrea
50	chr5:95169400-95169800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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