Variant report

Variant rs3797270
Chromosome Location chr5:53455814-53455815
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:53409200-53465600 Weak transcription Fetal Intestine Large intestine
2 chr5:53425400-53467200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr5:53428000-53471600 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr5:53431800-53474000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:53432000-53462400 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr5:53432200-53467600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr5:53432600-53462000 Weak transcription Primary T cells fromperipheralblood blood
8 chr5:53433000-53480800 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr5:53435000-53462000 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr5:53441800-53461600 Weak transcription Primary B cells from cord blood blood
11 chr5:53441800-53461800 Weak transcription Primary T cells from cord blood blood
12 chr5:53442400-53464200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr5:53442800-53468400 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr5:53443000-53461600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr5:53443000-53466000 Weak transcription Fetal Muscle Leg muscle
16 chr5:53443200-53473800 Weak transcription Stomach Smooth Muscle stomach
17 chr5:53443600-53462200 Weak transcription Ovary ovary
18 chr5:53443600-53473800 Weak transcription Left Ventricle heart
19 chr5:53443800-53468600 Weak transcription Adipose Nuclei Adipose
20 chr5:53444000-53472800 Weak transcription Lung lung
21 chr5:53445200-53457800 Weak transcription Small Intestine intestine
22 chr5:53445200-53466000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr5:53445800-53468000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr5:53448200-53461600 Weak transcription Primary monocytes fromperipheralblood blood
25 chr5:53448800-53461200 Weak transcription Liver Liver
26 chr5:53448800-53465600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr5:53450200-53467600 Weak transcription Pancreas Pancrea
28 chr5:53451000-53468600 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr5:53451200-53468000 Weak transcription Primary B cells from peripheral blood blood
30 chr5:53451400-53476200 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr5:53452000-53472800 Weak transcription Rectal Mucosa Donor 29 rectum
32 chr5:53452800-53472400 Weak transcription Aorta Aorta
33 chr5:53453000-53465400 Weak transcription Duodenum Mucosa Duodenum
34 chr5:53454000-53469400 Weak transcription Psoas Muscle Psoas
35 chr5:53454600-53456800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:53454800-53456400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr5:53454800-53456400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr5:53454800-53456400 Enhancers A549 lung
39 chr5:53455000-53456000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:53455200-53456000 Enhancers HSMM muscle
41 chr5:53455200-53456000 Enhancers NHLF lung
42 chr5:53455200-53456000 Enhancers Osteobl bone
43 chr5:53455200-53456200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr5:53455400-53456000 Enhancers K562 blood
45 chr5:53455400-53456600 Enhancers Fetal Heart heart
46 chr5:53455600-53456200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr5:53455600-53456200 Enhancers HSMMtube muscle
48 chr5:53455600-53456800 Enhancers Rectal Smooth Muscle rectum
49 chr5:53455600-53462800 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr5:53455800-53456000 Enhancers Right Ventricle heart

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