Variant report

Variant	rs3797435
Chromosome Location	chr5:75953678-75953679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:75952527..75955158-chr5:75956774..75959814,3	K562	blood:
2	chr5:75952316..75955488-chr5:75956755..75959814,4	K562	blood:
3	chr5:75948504..75951182-chr5:75952065..75953941,2	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10942788	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2287930	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32947	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs3797437	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3797439	1.00[JPT][hapmap]
rs3797442	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3822546	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4704347	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4704348	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6896971	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75882600-75969400	Weak transcription	Stomach Mucosa	stomach
2	chr5:75914200-75953800	Weak transcription	Colonic Mucosa	Colon
3	chr5:75919200-75955400	Weak transcription	Fetal Kidney	kidney
4	chr5:75943800-75986600	Weak transcription	Gastric	stomach
5	chr5:75945200-75976200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:75945200-75976400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:75945200-76001000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:75945600-75976600	Strong transcription	Liver	Liver
9	chr5:75945800-75970400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:75946000-75953800	Weak transcription	Pancreas	Pancrea
11	chr5:75946000-75953800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:75946000-75955200	Weak transcription	Aorta	Aorta
13	chr5:75946000-75958600	Weak transcription	Fetal Stomach	stomach
14	chr5:75946000-75959000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:75946000-75967000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:75946200-75953800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:75946200-75954000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:75946200-75954200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:75946200-75954200	Weak transcription	Fetal Thymus	thymus
20	chr5:75946200-75954400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:75946200-75954400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:75946200-75954400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:75946200-75976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:75946400-76001000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr5:75946600-75975000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:75947000-75970600	Weak transcription	Small Intestine	intestine
27	chr5:75947800-75981800	Strong transcription	Primary T cells from cord blood	blood
28	chr5:75947800-75992000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:75948000-75976200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr5:75948000-75976200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr5:75948000-75976400	Strong transcription	Placenta	Placenta
32	chr5:75948000-76004600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:75948400-75967000	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:75948600-75958400	Strong transcription	Primary B cells from cord blood	blood
35	chr5:75948600-75958600	Weak transcription	Fetal Intestine Small	intestine
36	chr5:75949200-75954200	Weak transcription	HepG2	liver
37	chr5:75949200-75986600	Weak transcription	GM12878-XiMat	blood
38	chr5:75950200-75956200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:75950600-75969000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr5:75950800-75999400	Weak transcription	Ovary	ovary
41	chr5:75951000-75953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr5:75951000-75954400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr5:75951400-75953800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:75951600-75953800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr5:75951800-76001400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr5:75952400-75954400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:75952400-75956000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr5:75952600-75958800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr5:75952800-75956000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr5:75952800-75956800	Strong transcription	Rectal Mucosa Donor 29	rectum

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