Variant report

Variant rs3798488
Chromosome Location chr6:100904105-100904106
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:100897400-100908600 Weak transcription HSMMtube muscle
2 chr6:100898000-100906000 Weak transcription Muscle Satellite Cultured Cells --
3 chr6:100901600-100906800 ZNF genes & repeats Spleen Spleen
4 chr6:100901600-100907200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr6:100901800-100907600 Active TSS Pancreatic Islets Pancreatic Islet
6 chr6:100902000-100904400 Bivalent Enhancer Brain Hippocampus Middle brain
7 chr6:100902000-100913600 Active TSS Psoas Muscle Psoas
8 chr6:100903000-100904400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
9 chr6:100903200-100904200 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr6:100903200-100904200 Bivalent Enhancer Fetal Muscle Trunk muscle
11 chr6:100903200-100904400 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
12 chr6:100903200-100904400 Bivalent Enhancer HUVEC blood vessel
13 chr6:100903200-100904600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
14 chr6:100903200-100905000 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
15 chr6:100903200-100906000 Bivalent Enhancer hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr6:100903400-100904200 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
17 chr6:100903400-100904200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
18 chr6:100903400-100904200 Bivalent Enhancer Ganglion Eminence derived primary cultured neurospheres brain
19 chr6:100903400-100904200 Bivalent/Poised TSS Duodenum Mucosa Duodenum
20 chr6:100903400-100904200 Flanking Bivalent TSS/Enh Fetal Intestine Large intestine
21 chr6:100903400-100904600 Bivalent Enhancer Brain Germinal Matrix brain
22 chr6:100903600-100904200 Bivalent Enhancer Stomach Mucosa stomach
23 chr6:100903600-100904400 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
24 chr6:100903600-100904400 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin03 Skin
25 chr6:100903600-100904400 Bivalent/Poised TSS Colonic Mucosa Colon
26 chr6:100903600-100904400 Bivalent/Poised TSS Rectal Mucosa Donor 31 rectum
27 chr6:100903600-100905200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
28 chr6:100903800-100904200 Bivalent Enhancer hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr6:100903800-100904200 Flanking Bivalent TSS/Enh ES-UCSF4 Cell Line embryonic stem cell
30 chr6:100903800-100904200 Bivalent Enhancer Colon Smooth Muscle Colon
31 chr6:100903800-100904200 Bivalent Enhancer Duodenum Smooth Muscle Duodenum
32 chr6:100904000-100904200 Flanking Bivalent TSS/Enh H9 Cell Line embryonic stem cell
33 chr6:100904000-100904200 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
34 chr6:100904000-100904200 Flanking Bivalent TSS/Enh iPS DF 19.11 Cell Line embryonic stem cell
35 chr6:100904000-100904200 Bivalent/Poised TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr6:100904000-100904200 Flanking Bivalent TSS/Enh Liver Liver
37 chr6:100904000-100904200 Bivalent Enhancer Fetal Stomach stomach
38 chr6:100904000-100904200 Flanking Bivalent TSS/Enh Rectal Mucosa Donor 29 rectum
39 chr6:100904000-100904200 Bivalent Enhancer Small Intestine intestine
40 chr6:100904000-100904400 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
41 chr6:100904000-100904400 Flanking Bivalent TSS/Enh hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr6:100904000-100904400 Bivalent Enhancer Primary T regulatory cells fromperipheralblood blood
43 chr6:100904000-100904400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
44 chr6:100904000-100904400 Bivalent Enhancer Adipose Nuclei Adipose
45 chr6:100904000-100904400 Bivalent Enhancer Fetal Intestine Small intestine
46 chr6:100904000-100904400 Bivalent/Poised TSS Fetal Kidney kidney
47 chr6:100904000-100904400 Flanking Active TSS Pancreas Pancrea
48 chr6:100904000-100904400 Flanking Bivalent TSS/Enh Skeletal Muscle Female skeletal muscle

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